Tomato golden mosaic virus (strain Yellow vein) (TGMV)

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Tomato golden mosaic virus

Average proteome isoelectric point is 8.55

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P03567|REP_TGMVY Replication-associated protein OS=Tomato golden mosaic virus (strain Yellow vein) OX=223341 GN=AC1 PE=1 SV=1
MM1 pKa = 8.21DD2 pKa = 4.49SQLACPPNVFNYY14 pKa = 9.87IEE16 pKa = 4.45SNRR19 pKa = 11.84DD20 pKa = 3.15EE21 pKa = 4.43YY22 pKa = 11.33QLSHH26 pKa = 7.49DD27 pKa = 3.8LTEE30 pKa = 5.64IILQFPSTASQLSARR45 pKa = 11.84LSRR48 pKa = 11.84SCMKK52 pKa = 9.84IDD54 pKa = 3.15HH55 pKa = 6.44CVIEE59 pKa = 4.93FRR61 pKa = 11.84QQVPINATGSVVVEE75 pKa = 3.79IHH77 pKa = 7.05DD78 pKa = 4.74KK79 pKa = 11.31RR80 pKa = 11.84MTDD83 pKa = 3.41NEE85 pKa = 4.36SLQASWTFPVRR96 pKa = 11.84CNIDD100 pKa = 2.94LHH102 pKa = 6.2YY103 pKa = 10.34FSSSFFSLKK112 pKa = 10.83DD113 pKa = 3.74PIPWKK118 pKa = 10.43LYY120 pKa = 10.92YY121 pKa = 9.85KK122 pKa = 10.3VCDD125 pKa = 4.04SNVHH129 pKa = 5.15QRR131 pKa = 11.84THH133 pKa = 5.39FAKK136 pKa = 10.85FKK138 pKa = 10.96GKK140 pKa = 10.52LKK142 pKa = 10.82LSTAKK147 pKa = 10.37HH148 pKa = 5.69SVDD151 pKa = 2.95IPFRR155 pKa = 11.84APTVKK160 pKa = 10.11ILSKK164 pKa = 10.79QFTDD168 pKa = 3.13KK169 pKa = 11.25DD170 pKa = 3.51VDD172 pKa = 4.26FSHH175 pKa = 7.01VGYY178 pKa = 10.68GKK180 pKa = 9.29WDD182 pKa = 3.22RR183 pKa = 11.84KK184 pKa = 8.99MIRR187 pKa = 11.84SASTSTIGLTGPIEE201 pKa = 4.01LRR203 pKa = 11.84PGEE206 pKa = 4.29SWASRR211 pKa = 11.84STIGPSPSYY220 pKa = 10.69AGSDD224 pKa = 3.31QGDD227 pKa = 3.21AMHH230 pKa = 7.5PYY232 pKa = 9.94KK233 pKa = 10.61HH234 pKa = 6.44LNRR237 pKa = 11.84LGTTILDD244 pKa = 4.09PGEE247 pKa = 4.09SASIIGAEE255 pKa = 4.03RR256 pKa = 11.84TQSNITMSMVQLNEE270 pKa = 3.69IVRR273 pKa = 11.84ATVQEE278 pKa = 4.67CINTNCTPSQPKK290 pKa = 8.53TLQQ293 pKa = 3.14

Molecular weight: 32.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P03562|TRAP_TGMVY Transcriptional activator protein OS=Tomato golden mosaic virus (strain Yellow vein) OX=223341 GN=AC2 PE=1 SV=1
MM1 pKa = 7.98PKK3 pKa = 9.65RR4 pKa = 11.84DD5 pKa = 3.82APWRR9 pKa = 11.84LMAGTSKK16 pKa = 10.61VSRR19 pKa = 11.84SANYY23 pKa = 9.82SPRR26 pKa = 11.84GSLPKK31 pKa = 9.79RR32 pKa = 11.84DD33 pKa = 3.11AWVNRR38 pKa = 11.84PMYY41 pKa = 9.63RR42 pKa = 11.84KK43 pKa = 8.92PRR45 pKa = 11.84IYY47 pKa = 10.27RR48 pKa = 11.84SLRR51 pKa = 11.84GPDD54 pKa = 3.32VPKK57 pKa = 10.83GCEE60 pKa = 4.39GPCKK64 pKa = 9.35VQSYY68 pKa = 6.94EE69 pKa = 3.78QRR71 pKa = 11.84HH72 pKa = 6.34DD73 pKa = 3.04ISLVGKK79 pKa = 7.53VMCISDD85 pKa = 3.56VTRR88 pKa = 11.84GNGITHH94 pKa = 6.78RR95 pKa = 11.84VGKK98 pKa = 9.44RR99 pKa = 11.84FCVKK103 pKa = 9.92SVYY106 pKa = 10.16ILGKK110 pKa = 9.37IWMDD114 pKa = 3.39EE115 pKa = 4.0NIKK118 pKa = 10.61LKK120 pKa = 10.73NHH122 pKa = 5.95TNSVMFWLVRR132 pKa = 11.84DD133 pKa = 3.7RR134 pKa = 11.84RR135 pKa = 11.84PYY137 pKa = 8.05GTPMDD142 pKa = 4.6FGQVFNMFDD151 pKa = 3.99NEE153 pKa = 4.11PSTATVKK160 pKa = 10.85NDD162 pKa = 2.82LRR164 pKa = 11.84DD165 pKa = 3.5RR166 pKa = 11.84FQVIHH171 pKa = 6.91RR172 pKa = 11.84FHH174 pKa = 6.98AKK176 pKa = 8.01VTGGQYY182 pKa = 11.1ASNEE186 pKa = 3.84QALVRR191 pKa = 11.84RR192 pKa = 11.84FWKK195 pKa = 10.33VNNNVVYY202 pKa = 10.41NHH204 pKa = 5.87QEE206 pKa = 3.4AGKK209 pKa = 10.41YY210 pKa = 8.39EE211 pKa = 4.09NHH213 pKa = 6.52TEE215 pKa = 3.99NALLLYY221 pKa = 7.29MACTHH226 pKa = 7.07ASNPVYY232 pKa = 9.86ATLKK236 pKa = 9.47IRR238 pKa = 11.84IYY240 pKa = 10.59FYY242 pKa = 11.38DD243 pKa = 4.2SITNN247 pKa = 3.6

Molecular weight: 28.68 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1494

85

352

213.4

24.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.685 ± 0.204

1.941 ± 0.199

5.02 ± 0.44

4.418 ± 0.559

4.685 ± 0.533

5.154 ± 0.444

3.548 ± 0.14

6.158 ± 0.546

6.024 ± 0.535

7.028 ± 0.665

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.075 ± 0.468

5.89 ± 0.5

5.02 ± 0.525

4.485 ± 0.725

7.296 ± 0.977

9.371 ± 0.955

5.957 ± 0.829

5.756 ± 0.887

1.539 ± 0.167

3.949 ± 0.568
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski