Capybara microvirus Cap1_SP_188

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVQ8|A0A4V1FVQ8_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_188 OX=2585406 PE=3 SV=1
MM1 pKa = 7.79AKK3 pKa = 9.99HH4 pKa = 5.98NYY6 pKa = 9.01YY7 pKa = 10.71SIVLRR12 pKa = 11.84NVQDD16 pKa = 4.17VEE18 pKa = 5.08DD19 pKa = 4.02SDD21 pKa = 5.62SNFFFDD27 pKa = 3.78RR28 pKa = 11.84PFYY31 pKa = 11.3AEE33 pKa = 3.66TDD35 pKa = 3.34AMAKK39 pKa = 10.26LIFEE43 pKa = 5.01ASVCSNPVYY52 pKa = 11.33SMLGDD57 pKa = 5.14DD58 pKa = 3.83IALFKK63 pKa = 10.6IGQFDD68 pKa = 3.95DD69 pKa = 3.93EE70 pKa = 4.59EE71 pKa = 7.08GIMFNIDD78 pKa = 3.12GFDD81 pKa = 3.48EE82 pKa = 4.55LFIMTGSEE90 pKa = 3.78ALNVHH95 pKa = 6.06NEE97 pKa = 3.75RR98 pKa = 11.84SEE100 pKa = 4.42KK101 pKa = 10.23NGKK104 pKa = 8.96DD105 pKa = 3.16GKK107 pKa = 10.16VANN110 pKa = 4.43

Molecular weight: 12.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4H5|A0A4P8W4H5_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_188 OX=2585406 PE=4 SV=1
MM1 pKa = 7.35ARR3 pKa = 11.84WKK5 pKa = 8.87TAEE8 pKa = 4.07GKK10 pKa = 10.29KK11 pKa = 5.6VTRR14 pKa = 11.84YY15 pKa = 9.83IGTSGNIQGIPLDD28 pKa = 3.62AEE30 pKa = 4.44YY31 pKa = 10.74FSVGCGHH38 pKa = 7.61CIACRR43 pKa = 11.84LSKK46 pKa = 11.04SKK48 pKa = 10.76DD49 pKa = 2.78WANRR53 pKa = 11.84MTLEE57 pKa = 3.97AMYY60 pKa = 10.39HH61 pKa = 5.3SSCFFLTLTYY71 pKa = 11.05DD72 pKa = 3.81DD73 pKa = 3.82AHH75 pKa = 8.31LPEE78 pKa = 4.11QHH80 pKa = 5.99LQKK83 pKa = 10.98NGDD86 pKa = 3.2ISPIHH91 pKa = 6.3SLNKK95 pKa = 10.02KK96 pKa = 9.44HH97 pKa = 6.39FQDD100 pKa = 3.38FMKK103 pKa = 10.54RR104 pKa = 11.84LRR106 pKa = 11.84WKK108 pKa = 10.45FRR110 pKa = 11.84DD111 pKa = 3.41VEE113 pKa = 3.84IRR115 pKa = 11.84YY116 pKa = 7.41YY117 pKa = 11.1ACGEE121 pKa = 4.04YY122 pKa = 10.64GEE124 pKa = 4.94KK125 pKa = 10.42SMRR128 pKa = 11.84PHH130 pKa = 4.8YY131 pKa = 10.08HH132 pKa = 6.93AIIFGLPLDD141 pKa = 4.12RR142 pKa = 11.84LGDD145 pKa = 4.52AIYY148 pKa = 10.29SGCSSGFKK156 pKa = 10.07VFAYY160 pKa = 9.77TEE162 pKa = 4.37LSKK165 pKa = 11.09LWVFGNHH172 pKa = 5.44IVAEE176 pKa = 4.48ANWQTMAYY184 pKa = 7.51TSRR187 pKa = 11.84YY188 pKa = 5.63ITKK191 pKa = 9.0KK192 pKa = 10.11QFGIGSKK199 pKa = 9.59IYY201 pKa = 10.43EE202 pKa = 4.16EE203 pKa = 4.28LGYY206 pKa = 10.22IPEE209 pKa = 4.36FSLMSRR215 pKa = 11.84KK216 pKa = 9.59PGIGKK221 pKa = 8.81IWLDD225 pKa = 3.23ASRR228 pKa = 11.84YY229 pKa = 9.75SVLDD233 pKa = 3.71DD234 pKa = 3.52KK235 pKa = 11.52AIYY238 pKa = 10.08IPGKK242 pKa = 9.53GKK244 pKa = 10.16QPIPRR249 pKa = 11.84YY250 pKa = 9.49FKK252 pKa = 10.92EE253 pKa = 3.95KK254 pKa = 10.79LKK256 pKa = 10.54DD257 pKa = 2.88ICYY260 pKa = 9.96FCDD263 pKa = 3.16VDD265 pKa = 5.26GVINPTDD272 pKa = 3.3EE273 pKa = 4.71ALWLEE278 pKa = 4.14FDD280 pKa = 3.4DD281 pKa = 3.9WLRR284 pKa = 11.84DD285 pKa = 3.72VGFHH289 pKa = 6.07QYY291 pKa = 10.72CEE293 pKa = 4.05QQMKK297 pKa = 10.56LDD299 pKa = 3.94QTTLTYY305 pKa = 10.71SEE307 pKa = 4.45VLEE310 pKa = 4.23NTQYY314 pKa = 11.63AHH316 pKa = 6.06EE317 pKa = 4.27QVASSLGRR325 pKa = 11.84KK326 pKa = 8.4GVV328 pKa = 3.16

Molecular weight: 37.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1461

110

598

292.2

32.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.297 ± 0.926

1.3 ± 0.407

7.529 ± 0.607

5.476 ± 0.501

5.339 ± 0.714

7.05 ± 0.521

2.19 ± 0.439

5.681 ± 0.365

5.955 ± 1.456

6.776 ± 0.392

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.396 ± 0.22

5.133 ± 0.95

4.107 ± 1.082

3.901 ± 0.409

4.312 ± 0.443

9.446 ± 2.198

5.065 ± 0.519

5.749 ± 0.755

1.437 ± 0.294

4.86 ± 0.401
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski