Penicillium polonicum

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta;

Average proteome isoelectric point is 6.3

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10627 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V6N734|A0A1V6N734_9EURO Uncharacterized protein OS=Penicillium polonicum OX=60169 GN=PENPOL_c023G07513 PE=4 SV=1
MM1 pKa = 7.95RR2 pKa = 11.84VQQLLPLCGLLLTSVAIASKK22 pKa = 10.68LDD24 pKa = 3.54NDD26 pKa = 4.87DD27 pKa = 3.41VPNRR31 pKa = 11.84CWPACGPVVGIAKK44 pKa = 10.16SCDD47 pKa = 3.49DD48 pKa = 3.24QHH50 pKa = 6.87EE51 pKa = 4.38RR52 pKa = 11.84DD53 pKa = 3.76SSEE56 pKa = 3.82IQCICNWDD64 pKa = 3.5AAKK67 pKa = 8.97TQIPLCSACITQYY80 pKa = 9.2QTDD83 pKa = 3.85KK84 pKa = 10.48RR85 pKa = 11.84NHH87 pKa = 6.59NITHH91 pKa = 6.89NDD93 pKa = 3.42HH94 pKa = 7.7DD95 pKa = 6.23DD96 pKa = 5.2DD97 pKa = 7.63DD98 pKa = 7.37DD99 pKa = 7.69DD100 pKa = 7.66DD101 pKa = 7.62DD102 pKa = 7.63DD103 pKa = 7.63DD104 pKa = 7.57DD105 pKa = 6.61DD106 pKa = 6.6DD107 pKa = 6.14NEE109 pKa = 4.5ALDD112 pKa = 4.81LVHH115 pKa = 6.72SCSLTTTTYY124 pKa = 10.82NPAATSVTGTSTTTAGSNTATTTGTSSTTTSNGASGTNSQDD165 pKa = 3.15STSSVSSGSSNLASASSGSASSSNPTPDD193 pKa = 3.0AAAGISAPGAASMAGVMGLMAFAWLL218 pKa = 3.69

Molecular weight: 22.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V6NUI8|A0A1V6NUI8_9EURO Uncharacterized protein OS=Penicillium polonicum OX=60169 GN=PENPOL_c003G05735 PE=3 SV=1
MM1 pKa = 7.89PSNKK5 pKa = 8.19TFRR8 pKa = 11.84TKK10 pKa = 10.49QKK12 pKa = 9.65LAKK15 pKa = 9.74AQRR18 pKa = 11.84QNRR21 pKa = 11.84PIPQWIRR28 pKa = 11.84LRR30 pKa = 11.84TGNTIRR36 pKa = 4.53

Molecular weight: 4.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10627

0

10627

5256275

8

6527

494.6

54.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.406 ± 0.02

1.246 ± 0.008

5.651 ± 0.016

6.093 ± 0.026

3.83 ± 0.015

6.772 ± 0.019

2.44 ± 0.01

5.148 ± 0.018

4.596 ± 0.019

9.019 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.263 ± 0.008

3.743 ± 0.012

6.047 ± 0.03

4.055 ± 0.015

5.879 ± 0.019

8.348 ± 0.024

6.024 ± 0.014

6.143 ± 0.018

1.495 ± 0.009

2.8 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski