Olive viral satellite RNA

Taxonomy: Viruses; Satellites; RNA satellites

Average proteome isoelectric point is 9.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|V5J7G1|V5J7G1_9VIRU Coat protein OS=Olive viral satellite RNA OX=1250316 PE=4 SV=1
MM1 pKa = 7.66ARR3 pKa = 11.84GRR5 pKa = 11.84RR6 pKa = 11.84SNRR9 pKa = 11.84RR10 pKa = 11.84TRR12 pKa = 11.84RR13 pKa = 11.84AAPRR17 pKa = 11.84RR18 pKa = 11.84NPAAITDD25 pKa = 3.99MYY27 pKa = 10.84FCTVPSASTQALNRR41 pKa = 11.84DD42 pKa = 3.62TFPILKK48 pKa = 10.54SMGDD52 pKa = 3.19RR53 pKa = 11.84PFRR56 pKa = 11.84VAGISIEE63 pKa = 4.14YY64 pKa = 10.27SSPLPCLVQFRR75 pKa = 11.84CYY77 pKa = 10.02GPSMTDD83 pKa = 3.36NINSSGVLMAGPQPRR98 pKa = 11.84RR99 pKa = 11.84RR100 pKa = 11.84NLRR103 pKa = 11.84SRR105 pKa = 11.84GSWFPGNTAGSTTLAAIDD123 pKa = 3.86VLRR126 pKa = 11.84SDD128 pKa = 3.83TVRR131 pKa = 11.84AQTDD135 pKa = 3.14VRR137 pKa = 11.84ATFVVRR143 pKa = 11.84IRR145 pKa = 11.84FFVAPPEE152 pKa = 4.24LQSRR156 pKa = 4.14

Molecular weight: 17.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|V5J7G1|V5J7G1_9VIRU Coat protein OS=Olive viral satellite RNA OX=1250316 PE=4 SV=1
MM1 pKa = 7.66ARR3 pKa = 11.84GRR5 pKa = 11.84RR6 pKa = 11.84SNRR9 pKa = 11.84RR10 pKa = 11.84TRR12 pKa = 11.84RR13 pKa = 11.84AAPRR17 pKa = 11.84RR18 pKa = 11.84NPAAITDD25 pKa = 3.99MYY27 pKa = 10.84FCTVPSASTQALNRR41 pKa = 11.84DD42 pKa = 3.62TFPILKK48 pKa = 10.54SMGDD52 pKa = 3.19RR53 pKa = 11.84PFRR56 pKa = 11.84VAGISIEE63 pKa = 4.14YY64 pKa = 10.27SSPLPCLVQFRR75 pKa = 11.84CYY77 pKa = 10.02GPSMTDD83 pKa = 3.36NINSSGVLMAGPQPRR98 pKa = 11.84RR99 pKa = 11.84RR100 pKa = 11.84NLRR103 pKa = 11.84SRR105 pKa = 11.84GSWFPGNTAGSTTLAAIDD123 pKa = 3.86VLRR126 pKa = 11.84SDD128 pKa = 3.83TVRR131 pKa = 11.84AQTDD135 pKa = 3.14VRR137 pKa = 11.84ATFVVRR143 pKa = 11.84IRR145 pKa = 11.84FFVAPPEE152 pKa = 4.24LQSRR156 pKa = 4.14

Molecular weight: 17.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

156

156

156

156.0

17.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.615 ± 0.0

1.923 ± 0.0

4.487 ± 0.0

1.282 ± 0.0

5.128 ± 0.0

5.769 ± 0.0

0.0 ± 0.0

4.487 ± 0.0

0.641 ± 0.0

5.769 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.205 ± 0.0

4.487 ± 0.0

8.333 ± 0.0

3.205 ± 0.0

15.385 ± 0.0

9.615 ± 0.0

7.692 ± 0.0

6.41 ± 0.0

0.641 ± 0.0

1.923 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski