Paenibacillus prosopidis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6048 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A368VRC7|A0A368VRC7_9BACL Uncharacterized protein OS=Paenibacillus prosopidis OX=630520 GN=DFP97_11480 PE=4 SV=1
MM1 pKa = 7.24NKK3 pKa = 9.48IMMVLTLILLLSGCSAANNNVGNTPDD29 pKa = 3.47NSNPSTNVGQGNQPDD44 pKa = 3.98PSEE47 pKa = 4.28PAPEE51 pKa = 4.06EE52 pKa = 3.84TDD54 pKa = 2.93TSNKK58 pKa = 9.53VEE60 pKa = 4.21EE61 pKa = 4.5EE62 pKa = 4.31EE63 pKa = 4.28EE64 pKa = 3.87PAAATTEE71 pKa = 4.1QEE73 pKa = 3.77AAEE76 pKa = 4.06AVILALKK83 pKa = 8.85EE84 pKa = 3.91ADD86 pKa = 3.5MTALAAYY93 pKa = 8.64IHH95 pKa = 7.23PDD97 pKa = 2.94KK98 pKa = 11.3GLLFSPYY105 pKa = 10.82AHH107 pKa = 7.53IDD109 pKa = 3.32TASAKK114 pKa = 9.48VFPAAGLPALTDD126 pKa = 3.39PTVYY130 pKa = 9.25TWGSYY135 pKa = 10.87DD136 pKa = 3.43GTGDD140 pKa = 4.22PIEE143 pKa = 4.72LTFQQYY149 pKa = 9.66FDD151 pKa = 3.72KK152 pKa = 10.91FVYY155 pKa = 10.51DD156 pKa = 3.66KK157 pKa = 11.56DD158 pKa = 4.18FIEE161 pKa = 5.18PEE163 pKa = 4.24TIGVDD168 pKa = 3.76EE169 pKa = 5.05IKK171 pKa = 11.18GEE173 pKa = 4.21GNTLVNIKK181 pKa = 10.5DD182 pKa = 3.86VFPNSYY188 pKa = 10.91VMDD191 pKa = 4.0YY192 pKa = 10.64YY193 pKa = 11.29FSGFDD198 pKa = 3.23AQYY201 pKa = 11.55NGMDD205 pKa = 3.72WEE207 pKa = 4.3SLILVLEE214 pKa = 4.38EE215 pKa = 5.87LDD217 pKa = 3.89GAWYY221 pKa = 10.36VSAIVHH227 pKa = 5.25SQWTII232 pKa = 2.91

Molecular weight: 25.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A368VMV4|A0A368VMV4_9BACL Uncharacterized protein OS=Paenibacillus prosopidis OX=630520 GN=DFP97_114113 PE=4 SV=1
MM1 pKa = 7.9RR2 pKa = 11.84PTFKK6 pKa = 10.84PNVSKK11 pKa = 10.73RR12 pKa = 11.84AKK14 pKa = 8.72VHH16 pKa = 5.43GFRR19 pKa = 11.84KK20 pKa = 10.04RR21 pKa = 11.84MSTKK25 pKa = 10.18NGRR28 pKa = 11.84KK29 pKa = 8.78VLAARR34 pKa = 11.84RR35 pKa = 11.84QRR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.84VLSAA44 pKa = 4.11

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6048

0

6048

1908774

26

2783

315.6

35.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.075 ± 0.04

0.754 ± 0.009

5.195 ± 0.025

6.642 ± 0.034

4.283 ± 0.024

7.326 ± 0.029

2.074 ± 0.015

6.974 ± 0.025

5.487 ± 0.027

9.812 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.804 ± 0.017

4.169 ± 0.025

3.978 ± 0.021

3.783 ± 0.02

4.876 ± 0.029

6.344 ± 0.027

5.49 ± 0.031

6.943 ± 0.026

1.377 ± 0.012

3.614 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski