Kitasatospora atroaurantiaca

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Kitasatospora

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6749 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A561EJ01|A0A561EJ01_9ACTN Uncharacterized protein OS=Kitasatospora atroaurantiaca OX=285545 GN=FB465_0486 PE=4 SV=1
MM1 pKa = 7.61LVTDD5 pKa = 5.11IDD7 pKa = 4.04DD8 pKa = 4.09LSYY11 pKa = 10.97VAVMYY16 pKa = 10.0PGLDD20 pKa = 3.13VYY22 pKa = 11.15LADD25 pKa = 4.95LADD28 pKa = 4.1VLDD31 pKa = 4.9LDD33 pKa = 4.97FDD35 pKa = 4.11THH37 pKa = 6.16TSLIDD42 pKa = 3.41HH43 pKa = 7.28PEE45 pKa = 3.66YY46 pKa = 9.42GARR49 pKa = 11.84MRR51 pKa = 11.84EE52 pKa = 4.04HH53 pKa = 7.34AEE55 pKa = 3.96NTGLGPDD62 pKa = 4.07GIEE65 pKa = 4.18FQDD68 pKa = 4.55LSWPGG73 pKa = 3.07

Molecular weight: 8.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A561ESN3|A0A561ESN3_9ACTN Uncharacterized protein OS=Kitasatospora atroaurantiaca OX=285545 GN=FB465_3701 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILAARR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.43GRR40 pKa = 11.84SSISAA45 pKa = 3.4

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6749

0

6749

2226480

29

4030

329.9

35.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.802 ± 0.051

0.803 ± 0.008

5.617 ± 0.026

5.462 ± 0.032

2.716 ± 0.016

9.373 ± 0.03

2.235 ± 0.015

3.262 ± 0.021

2.089 ± 0.026

10.654 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.642 ± 0.011

1.927 ± 0.023

6.185 ± 0.028

3.098 ± 0.018

7.638 ± 0.04

5.294 ± 0.024

6.203 ± 0.035

8.288 ± 0.031

1.564 ± 0.013

2.148 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski