Fermentimonas caenicola

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Dysgonomonadaceae; Fermentimonas

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2391 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A098BZY2|A0A098BZY2_9BACT His_kinase domain-containing protein OS=Fermentimonas caenicola OX=1562970 GN=ING2E5B_0974 PE=4 SV=1
MM1 pKa = 7.61LALTMAGIQSCSDD14 pKa = 3.45EE15 pKa = 4.21LHH17 pKa = 7.27DD18 pKa = 4.59VGDD21 pKa = 3.99VQVSFTATLPTDD33 pKa = 2.91TRR35 pKa = 11.84TRR37 pKa = 11.84SFGKK41 pKa = 10.29AEE43 pKa = 3.95QVNTLVVGIFKK54 pKa = 10.65KK55 pKa = 10.93GIADD59 pKa = 3.34VHH61 pKa = 6.0TNSGGSWNYY70 pKa = 10.48YY71 pKa = 9.61EE72 pKa = 5.53IGRR75 pKa = 11.84QSFPINGTSANVQLTLAQEE94 pKa = 3.94QTYY97 pKa = 11.19SFVFWAYY104 pKa = 10.75DD105 pKa = 3.74GNQSIYY111 pKa = 10.84DD112 pKa = 3.8IDD114 pKa = 4.6DD115 pKa = 3.47LTAIEE120 pKa = 5.32MNTLPNPTTFAQAEE134 pKa = 3.96AADD137 pKa = 3.98AFFATMEE144 pKa = 5.58DD145 pKa = 3.15ITITGDD151 pKa = 2.99CSYY154 pKa = 10.36PVEE157 pKa = 4.31LVRR160 pKa = 11.84PLAQINVGTTGTPMQAVFKK179 pKa = 10.91ANDD182 pKa = 3.53VPDD185 pKa = 3.55TFYY188 pKa = 10.87PFTNTVSGAAEE199 pKa = 4.05FTWNFSEE206 pKa = 4.52TTTEE210 pKa = 4.0TFSADD215 pKa = 2.98GTEE218 pKa = 3.99YY219 pKa = 11.02NYY221 pKa = 11.18LAMGYY226 pKa = 9.77VFAPTTATNISAEE239 pKa = 4.14LTLTDD244 pKa = 3.96GNNSKK249 pKa = 8.36TVEE252 pKa = 4.33FPQVEE257 pKa = 4.04IEE259 pKa = 3.96ANQRR263 pKa = 11.84SNIAGNFTPTEE274 pKa = 3.91

Molecular weight: 29.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A098C2W4|A0A098C2W4_9BACT HTH domain protein OS=Fermentimonas caenicola OX=1562970 GN=ING2E5B_1484 PE=4 SV=1
MM1 pKa = 7.84TIRR4 pKa = 11.84NLTKK8 pKa = 10.74EE9 pKa = 4.39EE10 pKa = 3.87ILDD13 pKa = 3.57QIKK16 pKa = 10.72YY17 pKa = 10.46LEE19 pKa = 4.07QNISNGSVSYY29 pKa = 8.93RR30 pKa = 11.84TNRR33 pKa = 11.84LNRR36 pKa = 11.84IRR38 pKa = 11.84TLKK41 pKa = 10.65ASLRR45 pKa = 11.84MASS48 pKa = 3.22

Molecular weight: 5.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2391

0

2391

847865

30

2268

354.6

40.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.128 ± 0.043

0.811 ± 0.017

5.722 ± 0.031

6.96 ± 0.042

4.767 ± 0.035

6.658 ± 0.043

1.715 ± 0.019

8.135 ± 0.047

6.791 ± 0.045

9.007 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.532 ± 0.02

5.791 ± 0.043

3.687 ± 0.023

3.089 ± 0.026

4.394 ± 0.034

6.794 ± 0.039

5.339 ± 0.032

6.304 ± 0.037

1.165 ± 0.022

4.211 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski