Primula malacoides virus China/Mar2007

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; Betapartitivirus; Primula malacoides virus 1

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A8W7G2|A8W7G2_9VIRU Putative capsid protein OS=Primula malacoides virus China/Mar2007 OX=479713 PE=4 SV=1
MM1 pKa = 7.81PFNAVRR7 pKa = 11.84NYY9 pKa = 10.0LAEE12 pKa = 3.97RR13 pKa = 11.84LVRR16 pKa = 11.84VRR18 pKa = 11.84TEE20 pKa = 3.93LKK22 pKa = 10.74NFTSSNRR29 pKa = 11.84EE30 pKa = 3.18PDD32 pKa = 3.15ATLEE36 pKa = 4.05LSQDD40 pKa = 3.3PDD42 pKa = 2.96LRR44 pKa = 11.84RR45 pKa = 11.84YY46 pKa = 9.82YY47 pKa = 11.24DD48 pKa = 3.19NTRR51 pKa = 11.84YY52 pKa = 10.27NSSNDD57 pKa = 2.93AKK59 pKa = 10.98YY60 pKa = 8.34RR61 pKa = 11.84TLNKK65 pKa = 10.05EE66 pKa = 3.51YY67 pKa = 9.43STLVEE72 pKa = 5.25AYY74 pKa = 8.27RR75 pKa = 11.84TDD77 pKa = 3.38NQQKK81 pKa = 7.73HH82 pKa = 4.96QPYY85 pKa = 9.34EE86 pKa = 3.75LHH88 pKa = 6.15QPIPADD94 pKa = 3.47AAPIIDD100 pKa = 4.23KK101 pKa = 10.31RR102 pKa = 11.84QPAPGLKK109 pKa = 9.6LVPLMYY115 pKa = 10.21HH116 pKa = 6.08YY117 pKa = 11.23GHH119 pKa = 7.13VIHH122 pKa = 7.49DD123 pKa = 4.88PDD125 pKa = 5.4PDD127 pKa = 3.61QPDD130 pKa = 3.36QTKK133 pKa = 10.21VYY135 pKa = 9.33PLDD138 pKa = 3.46SRR140 pKa = 11.84IYY142 pKa = 8.53NLIMSTYY149 pKa = 8.84PSYY152 pKa = 11.38LSVLHH157 pKa = 6.91DD158 pKa = 3.61YY159 pKa = 10.18CRR161 pKa = 11.84PIGTVEE167 pKa = 3.7ATFNDD172 pKa = 4.12FNTEE176 pKa = 4.13QIPSAPIDD184 pKa = 3.79EE185 pKa = 4.82DD186 pKa = 3.66RR187 pKa = 11.84KK188 pKa = 9.64QQILKK193 pKa = 10.22HH194 pKa = 5.58LFKK197 pKa = 10.95FLDD200 pKa = 3.63VKK202 pKa = 10.69PYY204 pKa = 10.98LPIHH208 pKa = 6.15FVDD211 pKa = 3.64TQYY214 pKa = 11.57CKK216 pKa = 10.19TPLVTGTGYY225 pKa = 10.81HH226 pKa = 5.59NRR228 pKa = 11.84YY229 pKa = 9.38SFKK232 pKa = 10.55QRR234 pKa = 11.84AHH236 pKa = 6.38AKK238 pKa = 8.37YY239 pKa = 10.09SHH241 pKa = 6.76PEE243 pKa = 3.6EE244 pKa = 4.37YY245 pKa = 10.6ALKK248 pKa = 8.8STSKK252 pKa = 10.77GYY254 pKa = 10.32FYY256 pKa = 11.17NATYY260 pKa = 10.79EE261 pKa = 3.99NARR264 pKa = 11.84TLVHH268 pKa = 7.17LIKK271 pKa = 10.08TYY273 pKa = 10.8GLPFNMQFACPKK285 pKa = 10.43SDD287 pKa = 4.26LTDD290 pKa = 3.52EE291 pKa = 4.48QINLYY296 pKa = 9.73ISKK299 pKa = 10.67ANQFFNDD306 pKa = 3.6YY307 pKa = 7.51PTLLFTRR314 pKa = 11.84NHH316 pKa = 5.35ISKK319 pKa = 10.63RR320 pKa = 11.84SGTLKK325 pKa = 10.07VRR327 pKa = 11.84PVYY330 pKa = 10.59AVDD333 pKa = 4.8DD334 pKa = 3.66IFIIIEE340 pKa = 4.07LMLTFPLTIQARR352 pKa = 11.84KK353 pKa = 8.74PSCCIMYY360 pKa = 10.42GLEE363 pKa = 4.17TIRR366 pKa = 11.84GSNHH370 pKa = 6.08YY371 pKa = 9.39IDD373 pKa = 4.88RR374 pKa = 11.84LARR377 pKa = 11.84PYY379 pKa = 10.35STFFSLDD386 pKa = 2.74WSSYY390 pKa = 6.99DD391 pKa = 3.17QRR393 pKa = 11.84LPRR396 pKa = 11.84VITDD400 pKa = 3.3IYY402 pKa = 9.28YY403 pKa = 9.62TDD405 pKa = 4.32FLRR408 pKa = 11.84SLIVINHH415 pKa = 7.09GYY417 pKa = 9.18QPTYY421 pKa = 10.39EE422 pKa = 4.22YY423 pKa = 8.37PTYY426 pKa = 10.44PDD428 pKa = 3.72LDD430 pKa = 3.56EE431 pKa = 5.2HH432 pKa = 6.91KK433 pKa = 10.43LYY435 pKa = 11.32SRR437 pKa = 11.84MDD439 pKa = 3.37NLLYY443 pKa = 10.37FLHH446 pKa = 6.14TWYY449 pKa = 11.35NNMTFLLPDD458 pKa = 4.16GYY460 pKa = 11.15AYY462 pKa = 10.68RR463 pKa = 11.84RR464 pKa = 11.84THH466 pKa = 6.4CGVPSGLYY474 pKa = 7.56NTQYY478 pKa = 11.31LDD480 pKa = 3.35SFGNLFLIIDD490 pKa = 3.86AMIEE494 pKa = 4.0FEE496 pKa = 4.25FTDD499 pKa = 3.95DD500 pKa = 4.72EE501 pKa = 4.35ISKK504 pKa = 9.98FQLLILGGDD513 pKa = 3.62NTGMTNLAIDD523 pKa = 5.24RR524 pKa = 11.84IDD526 pKa = 3.36KK527 pKa = 10.75FITFLEE533 pKa = 5.07TYY535 pKa = 10.78ALARR539 pKa = 11.84YY540 pKa = 10.2NMVLPKK546 pKa = 9.26TKK548 pKa = 10.53CILTSLRR555 pKa = 11.84SKK557 pKa = 10.46IVTLGYY563 pKa = 9.02EE564 pKa = 4.3CNYY567 pKa = 10.2GSPKK571 pKa = 9.94RR572 pKa = 11.84DD573 pKa = 2.66IHH575 pKa = 7.87KK576 pKa = 10.53LVAQLCFPEE585 pKa = 5.29NGLKK589 pKa = 10.23AHH591 pKa = 5.92TMSARR596 pKa = 11.84ATGIAYY602 pKa = 9.9ASAGQDD608 pKa = 2.64IMFHH612 pKa = 5.81SFCQDD617 pKa = 2.32VYY619 pKa = 11.4NIFRR623 pKa = 11.84SDD625 pKa = 3.49YY626 pKa = 10.75KK627 pKa = 10.75PDD629 pKa = 3.1VRR631 pKa = 11.84ANLYY635 pKa = 7.78FQRR638 pKa = 11.84QFLNDD643 pKa = 3.81LEE645 pKa = 4.72EE646 pKa = 4.49GVPDD650 pKa = 4.51LATPTVPPFPSLYY663 pKa = 9.97EE664 pKa = 3.71IRR666 pKa = 11.84KK667 pKa = 9.74LYY669 pKa = 10.74SKK671 pKa = 10.8YY672 pKa = 10.09QGPLSFTPKK681 pKa = 9.09WNSAHH686 pKa = 7.3FINEE690 pKa = 3.97PDD692 pKa = 3.82SVPISAKK699 pKa = 7.56TMRR702 pKa = 11.84QFEE705 pKa = 4.57EE706 pKa = 4.47EE707 pKa = 3.96FSIPLMTAATFEE719 pKa = 4.64TVVPP723 pKa = 4.51

Molecular weight: 84.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A8W7G2|A8W7G2_9VIRU Putative capsid protein OS=Primula malacoides virus China/Mar2007 OX=479713 PE=4 SV=1
MM1 pKa = 7.81SDD3 pKa = 2.97TVLQAKK9 pKa = 8.92TNFLKK14 pKa = 10.97NKK16 pKa = 10.01SPVLSVQEE24 pKa = 4.15SKK26 pKa = 10.7RR27 pKa = 11.84PKK29 pKa = 9.63ISRR32 pKa = 11.84DD33 pKa = 3.41LMPLFQSNTAARR45 pKa = 11.84SDD47 pKa = 4.47SSNQWTIDD55 pKa = 3.26VFPNMVPITMYY66 pKa = 11.06IMLTSIAHH74 pKa = 6.28ANDD77 pKa = 2.82VDD79 pKa = 3.51HH80 pKa = 6.89RR81 pKa = 11.84TTSKK85 pKa = 10.83VSVATICMYY94 pKa = 10.53HH95 pKa = 7.74LSIVYY100 pKa = 9.77GYY102 pKa = 10.95FLLNDD107 pKa = 4.23MITRR111 pKa = 11.84ASASAHH117 pKa = 4.79ARR119 pKa = 11.84PWIEE123 pKa = 3.89TSWKK127 pKa = 10.46RR128 pKa = 11.84EE129 pKa = 3.71FADD132 pKa = 4.66FLLTLPVPEE141 pKa = 4.83FLTPFLSQFQHH152 pKa = 5.65FTTDD156 pKa = 2.65RR157 pKa = 11.84TKK159 pKa = 11.2NVFLTPSAAGFDD171 pKa = 3.75HH172 pKa = 7.12NIFFGRR178 pKa = 11.84VFPLNMFSAIHH189 pKa = 7.12DD190 pKa = 4.03CTATLPGNTPRR201 pKa = 11.84IQVLQDD207 pKa = 3.45LYY209 pKa = 11.79SRR211 pKa = 11.84VLYY214 pKa = 9.92TITAPGFTCLIPDD227 pKa = 5.29LIGVTIDD234 pKa = 3.09QTTPTTANYY243 pKa = 7.91MNSKK247 pKa = 10.1LYY249 pKa = 10.06QVYY252 pKa = 7.91TAVFNPVLFRR262 pKa = 11.84DD263 pKa = 4.41FQHH266 pKa = 6.84RR267 pKa = 11.84SSLAALSFQSPVFANNHH284 pKa = 4.01VNAYY288 pKa = 10.02DD289 pKa = 3.97LLFSASAANLRR300 pKa = 11.84EE301 pKa = 4.29LKK303 pKa = 10.65VVLQVVSTVLDD314 pKa = 4.01GKK316 pKa = 9.33VTTSGTLGDD325 pKa = 4.83FLTKK329 pKa = 10.28PSGALAIKK337 pKa = 10.15HH338 pKa = 6.07GYY340 pKa = 7.32STYY343 pKa = 11.44ALPTWSYY350 pKa = 8.77NTNATKK356 pKa = 10.53SAVYY360 pKa = 10.16SAITTLTLTSEE371 pKa = 4.19RR372 pKa = 11.84DD373 pKa = 3.3RR374 pKa = 11.84AQDD377 pKa = 2.67ICFLQRR383 pKa = 11.84PAAAFNATTEE393 pKa = 4.39VTDD396 pKa = 3.3VTYY399 pKa = 10.79AATATPNQAVQLPTGHH415 pKa = 6.38QLTRR419 pKa = 11.84HH420 pKa = 5.74FPFSLLQVPNGAEE433 pKa = 3.69PFPRR437 pKa = 11.84HH438 pKa = 6.69DD439 pKa = 4.47NDD441 pKa = 5.27DD442 pKa = 3.81LVQFSDD448 pKa = 4.81FVHH451 pKa = 6.43TAPSVLVLDD460 pKa = 4.18TDD462 pKa = 4.33GEE464 pKa = 4.52LTISAHH470 pKa = 6.48LPLLAGKK477 pKa = 9.71IIEE480 pKa = 4.27SFEE483 pKa = 4.19IDD485 pKa = 3.09GSTIEE490 pKa = 4.59MPNVDD495 pKa = 4.9KK496 pKa = 11.33SLGLQNCLFADD507 pKa = 3.64SAVSYY512 pKa = 10.6RR513 pKa = 11.84LVRR516 pKa = 11.84PGSAFHH522 pKa = 6.33PQPAGSINPPLNRR535 pKa = 11.84VRR537 pKa = 11.84PNPRR541 pKa = 11.84PRR543 pKa = 11.84LPASSLLYY551 pKa = 10.72DD552 pKa = 3.67RR553 pKa = 11.84TEE555 pKa = 3.52IMLPNMNNRR564 pKa = 11.84IVEE567 pKa = 3.99ARR569 pKa = 11.84APDD572 pKa = 4.02TLPGMTRR579 pKa = 11.84RR580 pKa = 11.84AAVNFLRR587 pKa = 11.84YY588 pKa = 8.96AQSFFGFHH596 pKa = 5.85TVDD599 pKa = 3.04SSSNALSLDD608 pKa = 4.26TIPGMTNGLLHH619 pKa = 6.79LWSPYY624 pKa = 10.56SYY626 pKa = 10.95TPFEE630 pKa = 4.16NDD632 pKa = 3.39YY633 pKa = 11.28FPDD636 pKa = 4.68PDD638 pKa = 3.68LAEE641 pKa = 4.2SRR643 pKa = 11.84HH644 pKa = 5.29YY645 pKa = 10.56FLSNLRR651 pKa = 11.84TIFGTDD657 pKa = 3.34YY658 pKa = 11.38NLVQAKK664 pKa = 9.69HH665 pKa = 6.38PYY667 pKa = 8.61EE668 pKa = 4.31ALPVVV673 pKa = 3.92

Molecular weight: 74.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1396

673

723

698.0

79.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.948 ± 1.104

1.074 ± 0.219

6.16 ± 0.34

3.51 ± 0.65

5.874 ± 0.242

3.51 ± 0.037

3.009 ± 0.024

5.301 ± 0.656

3.797 ± 0.84

10.172 ± 0.25

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.077 ± 0.002

5.372 ± 0.181

7.092 ± 0.125

3.725 ± 0.105

5.229 ± 0.215

7.235 ± 0.816

8.309 ± 0.695

5.301 ± 0.916

0.573 ± 0.112

5.731 ± 1.431
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski