Bemisia-associated genomovirus AdO

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus bemta1

Average proteome isoelectric point is 7.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Z2X292|A0A1Z2X292_9VIRU Putative coat protein OS=Bemisia-associated genomovirus AdO OX=1986478 GN=CP PE=4 SV=1
MM1 pKa = 7.75PSFVHH6 pKa = 6.39NYY8 pKa = 9.2RR9 pKa = 11.84YY10 pKa = 10.74ALVTYY15 pKa = 9.62SQYY18 pKa = 11.76GDD20 pKa = 3.79LDD22 pKa = 3.28PWRR25 pKa = 11.84VMEE28 pKa = 4.64RR29 pKa = 11.84FSSLGAEE36 pKa = 4.14CIVARR41 pKa = 11.84EE42 pKa = 4.01HH43 pKa = 7.16HH44 pKa = 6.88EE45 pKa = 4.44DD46 pKa = 3.61GGLHH50 pKa = 5.69LHH52 pKa = 6.24VFADD56 pKa = 4.7FGRR59 pKa = 11.84KK60 pKa = 8.16FRR62 pKa = 11.84SRR64 pKa = 11.84RR65 pKa = 11.84TDD67 pKa = 2.87ILDD70 pKa = 3.06VDD72 pKa = 3.87GRR74 pKa = 11.84HH75 pKa = 6.37ANVEE79 pKa = 4.17PSAGTPEE86 pKa = 3.94KK87 pKa = 10.83GYY89 pKa = 10.94DD90 pKa = 3.47YY91 pKa = 10.69AIKK94 pKa = 10.83DD95 pKa = 3.47GDD97 pKa = 4.3VVCGGLARR105 pKa = 11.84PEE107 pKa = 3.94PSAVGDD113 pKa = 3.9GPTAAKK119 pKa = 8.46WARR122 pKa = 11.84ITSAEE127 pKa = 4.15TRR129 pKa = 11.84SEE131 pKa = 3.97FWKK134 pKa = 10.52LCHH137 pKa = 6.51EE138 pKa = 5.45LDD140 pKa = 4.41PKK142 pKa = 10.92AAACNFSALSKK153 pKa = 8.92YY154 pKa = 10.36CDD156 pKa = 2.81WRR158 pKa = 11.84FAEE161 pKa = 5.18DD162 pKa = 3.76PPEE165 pKa = 4.16YY166 pKa = 10.48EE167 pKa = 3.29HH168 pKa = 7.62DD169 pKa = 3.67GRR171 pKa = 11.84IKK173 pKa = 10.38FVPGDD178 pKa = 3.4GDD180 pKa = 4.83GRR182 pKa = 11.84DD183 pKa = 3.51DD184 pKa = 3.48WVSQSGIRR192 pKa = 11.84LDD194 pKa = 3.93EE195 pKa = 4.75PFLGMWVFAPNRR207 pKa = 11.84VKK209 pKa = 10.93SLVLYY214 pKa = 10.75GGTRR218 pKa = 11.84TGKK221 pKa = 5.93TTWARR226 pKa = 11.84SLGSHH231 pKa = 6.56VYY233 pKa = 10.64CIGLVSGTEE242 pKa = 4.09CARR245 pKa = 11.84GLDD248 pKa = 3.23AKK250 pKa = 10.93YY251 pKa = 10.81AVFDD255 pKa = 5.03DD256 pKa = 3.77IRR258 pKa = 11.84GGLAFFHH265 pKa = 7.2GYY267 pKa = 9.97KK268 pKa = 9.68EE269 pKa = 3.96WLGAQPHH276 pKa = 5.31VSIKK280 pKa = 9.68QLYY283 pKa = 8.38RR284 pKa = 11.84EE285 pKa = 4.38PYY287 pKa = 7.41YY288 pKa = 10.35MRR290 pKa = 11.84WGKK293 pKa = 7.47PTIWVCNTDD302 pKa = 3.55PRR304 pKa = 11.84LDD306 pKa = 4.29AYY308 pKa = 9.24PQNARR313 pKa = 11.84PDD315 pKa = 4.03FEE317 pKa = 4.46WMEE320 pKa = 4.29GNCTFIEE327 pKa = 4.49VTDD330 pKa = 3.95SLIEE334 pKa = 4.57SISHH338 pKa = 6.9ANTDD342 pKa = 3.19

Molecular weight: 38.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Z2X292|A0A1Z2X292_9VIRU Putative coat protein OS=Bemisia-associated genomovirus AdO OX=1986478 GN=CP PE=4 SV=1
MM1 pKa = 7.65ALRR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84RR7 pKa = 11.84PRR9 pKa = 11.84TTRR12 pKa = 11.84KK13 pKa = 9.58RR14 pKa = 11.84PARR17 pKa = 11.84RR18 pKa = 11.84SGGTTSRR25 pKa = 11.84RR26 pKa = 11.84RR27 pKa = 11.84YY28 pKa = 5.04PTTRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84YY35 pKa = 7.54PRR37 pKa = 11.84KK38 pKa = 9.1MSNKK42 pKa = 9.88RR43 pKa = 11.84ILNLTARR50 pKa = 11.84KK51 pKa = 9.74KK52 pKa = 10.39RR53 pKa = 11.84DD54 pKa = 3.14TMQSFTNLSAAGGTATFAAQPAFLYY79 pKa = 10.61GGRR82 pKa = 11.84TYY84 pKa = 10.72ILPWIATARR93 pKa = 11.84DD94 pKa = 3.26LSSNVNAPNTIAQEE108 pKa = 4.28SARR111 pKa = 11.84TATVCYY117 pKa = 9.75MRR119 pKa = 11.84GLKK122 pKa = 9.83EE123 pKa = 4.19RR124 pKa = 11.84IQIQTSSGIPWQWRR138 pKa = 11.84RR139 pKa = 11.84ICFTVKK145 pKa = 10.68GNDD148 pKa = 3.5LLIGVNGDD156 pKa = 3.8GDD158 pKa = 3.9RR159 pKa = 11.84QPLKK163 pKa = 9.3EE164 pKa = 4.18TTFGFMRR171 pKa = 11.84NVVDD175 pKa = 3.91WNDD178 pKa = 3.42KK179 pKa = 10.63ASAAIPLTEE188 pKa = 4.76ALFKK192 pKa = 10.78GQRR195 pKa = 11.84NTDD198 pKa = 2.83WRR200 pKa = 11.84SLLNAPVDD208 pKa = 3.86TRR210 pKa = 11.84RR211 pKa = 11.84VTLKK215 pKa = 10.19YY216 pKa = 10.46DD217 pKa = 3.12KK218 pKa = 10.81TRR220 pKa = 11.84IISSGNSNGVLRR232 pKa = 11.84NFNLWHH238 pKa = 6.72PMNKK242 pKa = 9.55NLVYY246 pKa = 10.83GDD248 pKa = 4.69DD249 pKa = 3.38EE250 pKa = 4.78GGNYY254 pKa = 9.76DD255 pKa = 4.02VEE257 pKa = 4.65YY258 pKa = 11.15

Molecular weight: 29.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

600

258

342

300.0

34.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.0 ± 0.146

1.833 ± 0.625

6.833 ± 1.06

4.5 ± 1.284

4.0 ± 0.531

8.5 ± 0.671

2.167 ± 1.051

4.167 ± 0.286

4.5 ± 0.318

6.833 ± 0.314

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.833 ± 0.291

4.5 ± 1.691

5.167 ± 0.304

2.167 ± 0.552

9.833 ± 1.975

6.0 ± 0.11

6.833 ± 1.687

5.333 ± 0.632

2.833 ± 0.3

4.167 ± 0.401
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski