Capnocytophaga sp. oral taxon 332 str. F0381

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; unclassified Capnocytophaga; Capnocytophaga sp. oral taxon 332

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2698 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L1P0F1|L1P0F1_9FLAO Transporter small conductance mechanosensitive ion channel MscS family protein OS=Capnocytophaga sp. oral taxon 332 str. F0381 OX=1127692 GN=HMPREF9075_01549 PE=3 SV=1
MM1 pKa = 6.7NTIVLKK7 pKa = 11.09NSINYY12 pKa = 8.43HH13 pKa = 5.25QYY15 pKa = 9.57QQIADD20 pKa = 4.33FFATIGVEE28 pKa = 3.8IANSYY33 pKa = 11.31GEE35 pKa = 4.24VTLQDD40 pKa = 4.15DD41 pKa = 4.08EE42 pKa = 5.52ALLEE46 pKa = 4.27ALDD49 pKa = 3.94MGITQADD56 pKa = 3.57NGLLIPHH63 pKa = 6.57NEE65 pKa = 3.59VMQEE69 pKa = 3.32IDD71 pKa = 4.01SLIKK75 pKa = 10.44SYY77 pKa = 11.22QKK79 pKa = 11.2

Molecular weight: 8.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L1P421|L1P421_9FLAO Biotin--[acetyl-CoA-carboxylase] ligase OS=Capnocytophaga sp. oral taxon 332 str. F0381 OX=1127692 GN=HMPREF9075_01147 PE=4 SV=1
MM1 pKa = 7.55HH2 pKa = 7.33FGKK5 pKa = 10.74GYY7 pKa = 10.26GNRR10 pKa = 11.84STAFAKK16 pKa = 10.64VFFTSHH22 pKa = 6.15ISLITTEE29 pKa = 4.35PSAKK33 pKa = 9.73VEE35 pKa = 4.01RR36 pKa = 11.84RR37 pKa = 11.84LSEE40 pKa = 4.09GKK42 pKa = 9.38SASWRR47 pKa = 11.84SRR49 pKa = 11.84VCEE52 pKa = 3.57ARR54 pKa = 11.84AARR57 pKa = 11.84TEE59 pKa = 4.16GKK61 pKa = 9.69SVSWRR66 pKa = 11.84SQVCEE71 pKa = 3.66ARR73 pKa = 11.84AAHH76 pKa = 6.08TNSKK80 pKa = 10.13SLPITFLSNKK90 pKa = 9.24INYY93 pKa = 8.42

Molecular weight: 10.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2698

0

2698

810813

39

4121

300.5

34.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.081 ± 0.054

0.887 ± 0.018

5.057 ± 0.039

6.705 ± 0.054

4.826 ± 0.038

6.113 ± 0.056

1.84 ± 0.022

7.448 ± 0.052

7.653 ± 0.06

9.35 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.126 ± 0.024

5.669 ± 0.041

3.605 ± 0.029

3.903 ± 0.034

3.844 ± 0.026

5.683 ± 0.038

6.185 ± 0.083

6.373 ± 0.045

1.041 ± 0.017

4.61 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski