Staphylococcus warneri

Taxonomy: cellular organisms; Bacteria;

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 24 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W6JPB2|A0A1W6JPB2_STAWA Integrase OS=Staphylococcus warneri OX=1292 PE=3 SV=1
MM1 pKa = 7.81NEE3 pKa = 3.75EE4 pKa = 3.89QLKK7 pKa = 10.23VIEE10 pKa = 5.47DD11 pKa = 3.78IYY13 pKa = 10.7STLGSVANDD22 pKa = 3.0KK23 pKa = 9.76ATEE26 pKa = 3.97YY27 pKa = 10.66EE28 pKa = 4.26HH29 pKa = 6.69YY30 pKa = 10.31FKK32 pKa = 10.81EE33 pKa = 4.53GHH35 pKa = 5.82NEE37 pKa = 3.2WTEE40 pKa = 4.07TVDD43 pKa = 5.3RR44 pKa = 11.84EE45 pKa = 4.06QHH47 pKa = 4.94LQAIIEE53 pKa = 4.17WALQQIEE60 pKa = 4.59NNFEE64 pKa = 4.31LEE66 pKa = 4.08NEE68 pKa = 4.12

Molecular weight: 8.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W6JPH5|A0A1W6JPH5_STAWA Uncharacterized protein OS=Staphylococcus warneri OX=1292 PE=4 SV=1
MM1 pKa = 6.99SQRR4 pKa = 11.84DD5 pKa = 3.57KK6 pKa = 11.04MFEE9 pKa = 3.84KK10 pKa = 10.81LKK12 pKa = 10.7RR13 pKa = 11.84NPKK16 pKa = 10.42NIDD19 pKa = 3.04LRR21 pKa = 11.84EE22 pKa = 3.97FEE24 pKa = 5.17SILKK28 pKa = 10.46KK29 pKa = 10.77FGFVVDD35 pKa = 3.71KK36 pKa = 10.92TSGKK40 pKa = 9.67GSHH43 pKa = 7.5FIYY46 pKa = 10.07YY47 pKa = 9.65HH48 pKa = 6.23PSKK51 pKa = 10.95SEE53 pKa = 3.25IRR55 pKa = 11.84RR56 pKa = 11.84TVNKK60 pKa = 9.3TSPLRR65 pKa = 11.84KK66 pKa = 8.71HH67 pKa = 7.14HH68 pKa = 6.48IRR70 pKa = 11.84TLIKK74 pKa = 10.55DD75 pKa = 3.47IEE77 pKa = 4.33QVIKK81 pKa = 10.94

Molecular weight: 9.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

24

0

24

4020

39

532

167.5

19.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.93 ± 0.38

0.522 ± 0.114

6.269 ± 0.467

7.836 ± 0.391

4.677 ± 0.325

3.408 ± 0.502

2.015 ± 0.337

9.179 ± 0.576

10.075 ± 0.432

8.483 ± 0.615

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.488 ± 0.295

8.458 ± 0.42

1.915 ± 0.242

3.706 ± 0.214

3.607 ± 0.389

6.716 ± 0.408

5.05 ± 0.301

5.572 ± 0.342

0.846 ± 0.1

5.249 ± 0.275
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski