Capybara microvirus Cap1_SP_70

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W3Z1|A0A4P8W3Z1_9VIRU Replication initiator protein OS=Capybara microvirus Cap1_SP_70 OX=2584789 PE=4 SV=1
MM1 pKa = 7.76RR2 pKa = 11.84VTKK5 pKa = 10.31KK6 pKa = 10.49LYY8 pKa = 10.18KK9 pKa = 9.02PCEE12 pKa = 3.73YY13 pKa = 10.49SPRR16 pKa = 11.84SLHH19 pKa = 7.49FITNPDD25 pKa = 3.64NPDD28 pKa = 3.2VLIPEE33 pKa = 4.52CTEE36 pKa = 4.01SDD38 pKa = 3.18IKK40 pKa = 10.96FYY42 pKa = 11.13DD43 pKa = 3.58LSLVSLQNAGIDD55 pKa = 3.65VQKK58 pKa = 11.17FNLKK62 pKa = 8.99TSAPSRR68 pKa = 11.84LEE70 pKa = 3.76KK71 pKa = 10.67EE72 pKa = 4.06MSVMQMGEE80 pKa = 4.25IISKK84 pKa = 10.39HH85 pKa = 5.9FDD87 pKa = 3.22TEE89 pKa = 4.43TLDD92 pKa = 4.61KK93 pKa = 10.98PIDD96 pKa = 3.84EE97 pKa = 4.93QKK99 pKa = 9.85TEE101 pKa = 3.75

Molecular weight: 11.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4Q9|A0A4P8W4Q9_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_70 OX=2584789 PE=3 SV=1
MM1 pKa = 7.59EE2 pKa = 4.35SAFYY6 pKa = 10.6KK7 pKa = 10.32IFNPKK12 pKa = 9.32KK13 pKa = 9.36CFDD16 pKa = 3.25MRR18 pKa = 11.84YY19 pKa = 10.12DD20 pKa = 3.28KK21 pKa = 11.13DD22 pKa = 3.78YY23 pKa = 11.43FILSKK28 pKa = 10.99SNSYY32 pKa = 11.34VNMRR36 pKa = 11.84QKK38 pKa = 10.32QLSMEE43 pKa = 3.47IRR45 pKa = 11.84LYY47 pKa = 11.38YY48 pKa = 9.96EE49 pKa = 4.52FEE51 pKa = 4.32YY52 pKa = 9.33CQKK55 pKa = 10.17MNGRR59 pKa = 11.84VYY61 pKa = 10.9FLTFTYY67 pKa = 10.9NNNNIPYY74 pKa = 9.59FLGEE78 pKa = 4.13PCPDD82 pKa = 3.38KK83 pKa = 11.25KK84 pKa = 11.13DD85 pKa = 3.37MQRR88 pKa = 11.84FLNHH92 pKa = 5.76SRR94 pKa = 11.84FARR97 pKa = 11.84NLEE100 pKa = 4.08KK101 pKa = 10.28IYY103 pKa = 10.42GYY105 pKa = 10.32KK106 pKa = 10.28FKK108 pKa = 10.92YY109 pKa = 10.13FCATEE114 pKa = 4.28LGDD117 pKa = 3.94GKK119 pKa = 10.58GKK121 pKa = 10.51RR122 pKa = 11.84GIGKK126 pKa = 8.6NPHH129 pKa = 5.0FHH131 pKa = 6.93VIFFLYY137 pKa = 7.34PTSEE141 pKa = 4.3VKK143 pKa = 10.91SMSDD147 pKa = 3.11EE148 pKa = 4.05QFNILAKK155 pKa = 9.95TYY157 pKa = 8.89WQGLNDD163 pKa = 4.04NGTLKK168 pKa = 10.61DD169 pKa = 3.98YY170 pKa = 11.28KK171 pKa = 10.16SANYY175 pKa = 10.1GHH177 pKa = 6.95VSTSDD182 pKa = 2.67KK183 pKa = 10.76GSRR186 pKa = 11.84VNDD189 pKa = 3.49FRR191 pKa = 11.84AIGYY195 pKa = 5.02TAKK198 pKa = 10.68YY199 pKa = 8.41VLKK202 pKa = 10.49DD203 pKa = 2.85IYY205 pKa = 9.79TQQRR209 pKa = 11.84DD210 pKa = 3.7KK211 pKa = 11.2FFKK214 pKa = 10.25HH215 pKa = 6.05HH216 pKa = 5.59LAEE219 pKa = 4.59YY220 pKa = 9.94ISNEE224 pKa = 3.05ISKK227 pKa = 11.02YY228 pKa = 9.78IDD230 pKa = 3.62AGHH233 pKa = 6.9EE234 pKa = 3.89DD235 pKa = 3.51FDD237 pKa = 5.12FYY239 pKa = 11.4KK240 pKa = 10.84SPEE243 pKa = 4.06YY244 pKa = 11.04YY245 pKa = 8.53IDD247 pKa = 3.81KK248 pKa = 10.86YY249 pKa = 11.16GLHH252 pKa = 6.12KK253 pKa = 9.55TQDD256 pKa = 3.43PYY258 pKa = 11.93GWFHH262 pKa = 5.34QCEE265 pKa = 4.62VEE267 pKa = 3.95WLRR270 pKa = 11.84PILKK274 pKa = 10.12LRR276 pKa = 11.84FQTYY280 pKa = 9.38YY281 pKa = 10.92EE282 pKa = 4.34LLSEE286 pKa = 4.23YY287 pKa = 10.55KK288 pKa = 10.2NRR290 pKa = 11.84YY291 pKa = 4.97STKK294 pKa = 10.52PMFSHH299 pKa = 7.01NLGLYY304 pKa = 10.29ALDD307 pKa = 4.1FVTPLGKK314 pKa = 10.15VKK316 pKa = 10.65YY317 pKa = 9.78YY318 pKa = 10.83SNNNICYY325 pKa = 7.98VTLPLYY331 pKa = 10.56LYY333 pKa = 10.52RR334 pKa = 11.84KK335 pKa = 8.07FFCTVEE341 pKa = 3.8KK342 pKa = 10.48SQYY345 pKa = 11.07NFTINKK351 pKa = 8.54NGKK354 pKa = 9.33KK355 pKa = 9.46IYY357 pKa = 10.25NNIYY361 pKa = 9.0VHH363 pKa = 6.11TKK365 pKa = 9.82QGIEE369 pKa = 3.56LLYY372 pKa = 10.76RR373 pKa = 11.84QFLYY377 pKa = 10.98KK378 pKa = 10.25LDD380 pKa = 3.95LSQNVLSALIPTLQNSKK397 pKa = 10.76LVDD400 pKa = 3.43EE401 pKa = 5.96FINFQKK407 pKa = 10.8EE408 pKa = 3.45KK409 pKa = 10.27GIYY412 pKa = 9.5YY413 pKa = 7.38EE414 pKa = 4.49TSTSTVIKK422 pKa = 10.26KK423 pKa = 8.97LQSYY427 pKa = 6.96EE428 pKa = 3.81FRR430 pKa = 11.84HH431 pKa = 6.79SYY433 pKa = 10.31FLYY436 pKa = 9.36NYY438 pKa = 9.21LYY440 pKa = 10.34KK441 pKa = 10.71GRR443 pKa = 11.84YY444 pKa = 7.63FPKK447 pKa = 10.22TNTNKK452 pKa = 8.9LTYY455 pKa = 10.54NEE457 pKa = 3.96INNYY461 pKa = 9.75YY462 pKa = 10.62SVGNLDD468 pKa = 3.46IYY470 pKa = 10.54TDD472 pKa = 3.99FVRR475 pKa = 11.84FHH477 pKa = 7.01TYY479 pKa = 10.41NEE481 pKa = 4.38CVTTKK486 pKa = 10.07QRR488 pKa = 11.84QSDD491 pKa = 3.38IFEE494 pKa = 4.76SYY496 pKa = 11.37DD497 pKa = 3.3VFPPFAQNLHH507 pKa = 6.11IYY509 pKa = 9.92CWIDD513 pKa = 3.47DD514 pKa = 4.04FQHH517 pKa = 6.99FILSQSDD524 pKa = 3.64EE525 pKa = 3.9RR526 pKa = 11.84SKK528 pKa = 11.43AIFYY532 pKa = 9.46EE533 pKa = 4.3KK534 pKa = 10.52ARR536 pKa = 11.84CRR538 pKa = 11.84RR539 pKa = 11.84NLKK542 pKa = 9.35PLKK545 pKa = 10.35KK546 pKa = 9.64YY547 pKa = 10.94LCVV550 pKa = 3.39

Molecular weight: 66.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1646

101

586

411.5

47.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.739 ± 1.781

1.094 ± 0.375

5.893 ± 0.693

5.772 ± 1.042

6.075 ± 0.793

5.832 ± 0.99

1.944 ± 0.344

5.225 ± 0.329

7.23 ± 1.151

8.688 ± 0.164

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.187 ± 0.366

6.865 ± 0.53

3.949 ± 0.584

4.496 ± 0.286

4.374 ± 0.233

7.412 ± 0.497

5.711 ± 0.345

5.164 ± 0.79

0.972 ± 0.207

6.379 ± 1.785
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski