Corynebacterium bovis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2067 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3R8PJ20|A0A3R8PJ20_9CORY PE family protein (Fragment) OS=Corynebacterium bovis OX=36808 GN=CXF42_09965 PE=4 SV=1
MM1 pKa = 7.08STRR4 pKa = 11.84TYY6 pKa = 9.87TVTGMSCGHH15 pKa = 6.78CEE17 pKa = 3.61NAVRR21 pKa = 11.84EE22 pKa = 4.33EE23 pKa = 4.08VSALDD28 pKa = 3.72GVSDD32 pKa = 3.77VTVSAEE38 pKa = 4.14TGTLTLDD45 pKa = 3.76APDD48 pKa = 4.63AVTDD52 pKa = 4.12DD53 pKa = 4.02AVVAAVDD60 pKa = 3.61EE61 pKa = 4.72AGYY64 pKa = 10.53AATRR68 pKa = 11.84AEE70 pKa = 4.1

Molecular weight: 7.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3R8R3U4|A0A3R8R3U4_9CORY DUF2786 domain-containing protein OS=Corynebacterium bovis OX=36808 GN=CXF42_10735 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.99GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84SGRR31 pKa = 11.84AIVSARR37 pKa = 11.84RR38 pKa = 11.84SKK40 pKa = 10.67GRR42 pKa = 11.84KK43 pKa = 9.06SLTAA47 pKa = 4.07

Molecular weight: 5.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2067

0

2067

719965

33

4922

348.3

36.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.1 ± 0.091

0.715 ± 0.011

7.033 ± 0.047

5.214 ± 0.067

2.607 ± 0.033

10.14 ± 0.067

2.091 ± 0.023

3.444 ± 0.04

1.742 ± 0.045

8.927 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.875 ± 0.021

1.81 ± 0.027

5.995 ± 0.053

2.366 ± 0.029

7.998 ± 0.051

5.192 ± 0.041

6.946 ± 0.051

9.652 ± 0.065

1.356 ± 0.019

1.795 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski