Ureaplasma parvum serovar 3 (strain ATCC 700970)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Ureaplasma; Ureaplasma parvum; Ureaplasma parvum serovar 3

Average proteome isoelectric point is 7.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 611 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9PR48|Q9PR48_UREPA Type I restriction enzyme S protein OS=Ureaplasma parvum serovar 3 (strain ATCC 700970) OX=273119 GN=hsdS-1 PE=4 SV=1
MM1 pKa = 7.64AKK3 pKa = 10.15YY4 pKa = 10.02IKK6 pKa = 9.99TGVSYY11 pKa = 11.14INLDD15 pKa = 3.29NARR18 pKa = 11.84TINILPEE25 pKa = 5.56DD26 pKa = 3.69IDD28 pKa = 4.29SYY30 pKa = 11.84LEE32 pKa = 4.02LGGDD36 pKa = 3.76EE37 pKa = 4.69AYY39 pKa = 8.02KK40 pKa = 10.68TSDD43 pKa = 4.0LGSEE47 pKa = 4.66LYY49 pKa = 10.29INYY52 pKa = 10.15ADD54 pKa = 4.33FEE56 pKa = 4.76STNILFDD63 pKa = 4.01LKK65 pKa = 10.97KK66 pKa = 10.85EE67 pKa = 3.92EE68 pKa = 4.13LQAKK72 pKa = 9.33IDD74 pKa = 3.8AFLISNDD81 pKa = 3.48TVLDD85 pKa = 3.98LSEE88 pKa = 4.41VFLDD92 pKa = 3.25IHH94 pKa = 6.73FSEE97 pKa = 5.91DD98 pKa = 3.15DD99 pKa = 4.49DD100 pKa = 5.13YY101 pKa = 12.11EE102 pKa = 4.19EE103 pKa = 5.32DD104 pKa = 3.86CCCEE108 pKa = 4.49DD109 pKa = 3.62EE110 pKa = 4.7CCSDD114 pKa = 4.15EE115 pKa = 5.16EE116 pKa = 5.79NEE118 pKa = 4.17ACCNSEE124 pKa = 3.92VKK126 pKa = 10.66VEE128 pKa = 4.11EE129 pKa = 4.47EE130 pKa = 4.46CCGGAKK136 pKa = 9.97DD137 pKa = 4.12DD138 pKa = 3.95CCGGHH143 pKa = 4.63EE144 pKa = 4.73HH145 pKa = 5.82EE146 pKa = 6.08HH147 pKa = 5.86EE148 pKa = 4.58VCCDD152 pKa = 3.44SEE154 pKa = 4.77TKK156 pKa = 10.23TSEE159 pKa = 4.18TQEE162 pKa = 4.2EE163 pKa = 5.47CCGGTKK169 pKa = 10.11DD170 pKa = 4.01DD171 pKa = 3.91CCGGHH176 pKa = 5.26EE177 pKa = 4.56HH178 pKa = 6.34EE179 pKa = 4.85HH180 pKa = 5.95HH181 pKa = 6.68HH182 pKa = 6.04HH183 pKa = 7.0HH184 pKa = 6.08SHH186 pKa = 5.1QHH188 pKa = 4.48

Molecular weight: 21.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q9PPN8|RSMA_UREPA Ribosomal RNA small subunit methyltransferase A OS=Ureaplasma parvum serovar 3 (strain ATCC 700970) OX=273119 GN=rsmA PE=3 SV=2
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84KK11 pKa = 8.78RR12 pKa = 11.84AKK14 pKa = 9.29VHH16 pKa = 5.53GFRR19 pKa = 11.84ARR21 pKa = 11.84MKK23 pKa = 9.24TKK25 pKa = 10.3NGRR28 pKa = 11.84NVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.53GRR39 pKa = 11.84HH40 pKa = 5.44SLTVSSEE47 pKa = 4.0KK48 pKa = 10.94

Molecular weight: 5.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

611

0

611

227764

34

5005

372.8

42.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.902 ± 0.087

0.664 ± 0.03

5.681 ± 0.078

5.756 ± 0.118

5.16 ± 0.076

4.133 ± 0.099

1.733 ± 0.034

10.323 ± 0.112

9.949 ± 0.089

10.003 ± 0.097

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.686 ± 0.058

9.069 ± 0.217

2.655 ± 0.055

3.835 ± 0.056

2.768 ± 0.074

5.989 ± 0.065

5.018 ± 0.085

5.36 ± 0.071

0.872 ± 0.027

4.443 ± 0.062
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski