Hymenobacter swuensis DY53

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter; Hymenobacter swuensis

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4612 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W8EY20|W8EY20_9BACT Uncharacterized protein OS=Hymenobacter swuensis DY53 OX=1227739 GN=Hsw_1077 PE=4 SV=1
MM1 pKa = 6.89STTYY5 pKa = 10.34PFLVADD11 pKa = 5.27LEE13 pKa = 4.46DD14 pKa = 3.42QATPGRR20 pKa = 11.84QQRR23 pKa = 11.84LLVNLSNMDD32 pKa = 3.23DD33 pKa = 3.96YY34 pKa = 12.11YY35 pKa = 11.91NVFEE39 pKa = 4.99KK40 pKa = 11.2YY41 pKa = 10.41GFSGSGASWAEE52 pKa = 3.91HH53 pKa = 6.34IEE55 pKa = 4.51TILEE59 pKa = 3.87EE60 pKa = 4.22HH61 pKa = 6.77APALLDD67 pKa = 3.51HH68 pKa = 6.97VEE70 pKa = 4.35LLGQGEE76 pKa = 4.41IFGVYY81 pKa = 9.23TDD83 pKa = 4.6GPGATEE89 pKa = 3.85QFLALIQPIFGDD101 pKa = 3.81LGSLSKK107 pKa = 10.88YY108 pKa = 10.32LSQADD113 pKa = 3.41PGDD116 pKa = 3.6FFEE119 pKa = 5.17

Molecular weight: 13.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W8EUR5|W8EUR5_9BACT Peptidase_M48 domain-containing protein OS=Hymenobacter swuensis DY53 OX=1227739 GN=Hsw_1339 PE=4 SV=1
MM1 pKa = 7.81KK2 pKa = 9.73IRR4 pKa = 11.84RR5 pKa = 11.84RR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84PIGPVRR14 pKa = 11.84GINPKK19 pKa = 9.79KK20 pKa = 10.45APPAGARR27 pKa = 11.84GAFRR31 pKa = 11.84KK32 pKa = 10.14CNSITT37 pKa = 3.34

Molecular weight: 4.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4612

0

4612

1509703

37

2493

327.3

36.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.394 ± 0.043

0.724 ± 0.011

4.781 ± 0.026

5.337 ± 0.04

4.087 ± 0.022

7.648 ± 0.04

2.066 ± 0.021

4.23 ± 0.031

3.769 ± 0.038

11.153 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.86 ± 0.016

3.694 ± 0.036

5.276 ± 0.025

4.894 ± 0.03

6.272 ± 0.033

5.408 ± 0.031

6.486 ± 0.041

7.169 ± 0.034

1.283 ± 0.016

3.468 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski