Rattus norvegicus papillomavirus 1 (isolate Rat/Germany/Schulz/2009) (RnPV-1)

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Pipapillomavirus; Pipapillomavirus 2

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C8AY94|C8AY94_RNPV1 Major capsid protein L1 OS=Rattus norvegicus papillomavirus 1 (isolate Rat/Germany/Schulz/2009) OX=664730 GN=L1 PE=3 SV=1
MM1 pKa = 7.25VSATRR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84VKK10 pKa = 10.34RR11 pKa = 11.84DD12 pKa = 3.07SASNLYY18 pKa = 9.65RR19 pKa = 11.84QCQVTGNCPPDD30 pKa = 3.41VANKK34 pKa = 10.19IEE36 pKa = 4.27GNTLADD42 pKa = 3.59KK43 pKa = 10.53LLKK46 pKa = 10.12IFSSIIYY53 pKa = 10.17LGGLGIGTGRR63 pKa = 11.84GTGEE67 pKa = 4.0TYY69 pKa = 10.56GYY71 pKa = 11.24GPINPGGGRR80 pKa = 11.84ITGTGTVMRR89 pKa = 11.84PGVVVEE95 pKa = 4.83PIGPAEE101 pKa = 4.09IVPVDD106 pKa = 3.64SVGPGEE112 pKa = 4.24SSIVPLLEE120 pKa = 4.05ATPDD124 pKa = 3.45VPINGGPEE132 pKa = 3.87VPPAGPDD139 pKa = 3.14TSTVDD144 pKa = 3.23VTSNIDD150 pKa = 3.32PVSDD154 pKa = 3.75VNVSGGTTITNTDD167 pKa = 3.28SAVIDD172 pKa = 3.9VQPAPSGPRR181 pKa = 11.84RR182 pKa = 11.84VTVTRR187 pKa = 11.84SEE189 pKa = 4.53HH190 pKa = 6.01NNPAYY195 pKa = 10.68VSVSAPPQGLGEE207 pKa = 4.39GGGFLLAGSEE217 pKa = 4.26SSGLIASTHH226 pKa = 5.62EE227 pKa = 3.93LDD229 pKa = 3.42AAVIIGGRR237 pKa = 11.84PPPEE241 pKa = 4.2TIFEE245 pKa = 4.98DD246 pKa = 3.55IEE248 pKa = 5.74LDD250 pKa = 3.65TFSATGGRR258 pKa = 11.84SEE260 pKa = 4.46FDD262 pKa = 2.76IEE264 pKa = 4.33EE265 pKa = 4.99PYY267 pKa = 11.15SSTPRR272 pKa = 11.84GGPLDD277 pKa = 3.53RR278 pKa = 11.84AVTRR282 pKa = 11.84FRR284 pKa = 11.84DD285 pKa = 3.77LYY287 pKa = 10.26NRR289 pKa = 11.84RR290 pKa = 11.84VQQVRR295 pKa = 11.84VSDD298 pKa = 3.99PEE300 pKa = 4.06QFLSAPARR308 pKa = 11.84AVTFEE313 pKa = 4.09NPAFDD318 pKa = 4.28SGDD321 pKa = 2.85ISLIFEE327 pKa = 3.99QDD329 pKa = 3.3VQAVQATPDD338 pKa = 4.15PDD340 pKa = 3.61FMDD343 pKa = 5.15IIRR346 pKa = 11.84LGRR349 pKa = 11.84PRR351 pKa = 11.84LSEE354 pKa = 3.59TADD357 pKa = 3.25RR358 pKa = 11.84YY359 pKa = 10.52VRR361 pKa = 11.84VSRR364 pKa = 11.84LGQRR368 pKa = 11.84GTIRR372 pKa = 11.84TRR374 pKa = 11.84SGLQIGGRR382 pKa = 11.84VHH384 pKa = 7.08YY385 pKa = 8.91YY386 pKa = 10.22TDD388 pKa = 4.32LSPIPRR394 pKa = 11.84DD395 pKa = 3.32IEE397 pKa = 4.19LSTLGEE403 pKa = 4.16ASGEE407 pKa = 3.88ADD409 pKa = 3.43LVDD412 pKa = 5.22GIGEE416 pKa = 4.27SSVIDD421 pKa = 3.81AGSVADD427 pKa = 3.94EE428 pKa = 4.43SMLIGEE434 pKa = 4.8GLGAPLDD441 pKa = 4.32DD442 pKa = 5.92LDD444 pKa = 5.63LISDD448 pKa = 4.4GSSVDD453 pKa = 4.12FSSTRR458 pKa = 11.84LEE460 pKa = 4.16FSFLTGSSNITLPEE474 pKa = 3.58QVTNVFGPGLYY485 pKa = 10.49VPDD488 pKa = 4.51IGTGTHH494 pKa = 7.08IIHH497 pKa = 6.3PQVVGEE503 pKa = 4.41VEE505 pKa = 4.72LEE507 pKa = 3.95DD508 pKa = 4.12SFPRR512 pKa = 11.84DD513 pKa = 3.67LFPGTEE519 pKa = 3.58IVFIPEE525 pKa = 3.98DD526 pKa = 3.82SIDD529 pKa = 4.14FYY531 pKa = 11.3LHH533 pKa = 6.17PSLRR537 pKa = 11.84RR538 pKa = 11.84RR539 pKa = 11.84KK540 pKa = 8.82RR541 pKa = 11.84KK542 pKa = 9.74YY543 pKa = 9.81FVRR546 pKa = 4.99

Molecular weight: 58.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C8AY90|C8AY90_RNPV1 Protein E7 OS=Rattus norvegicus papillomavirus 1 (isolate Rat/Germany/Schulz/2009) OX=664730 GN=E7 PE=3 SV=1
MM1 pKa = 7.03TLKK4 pKa = 10.83GYY6 pKa = 7.94TLLDD10 pKa = 3.44LCRR13 pKa = 11.84YY14 pKa = 9.18YY15 pKa = 10.94DD16 pKa = 3.59VSPTSFPLDD25 pKa = 3.56CTFCDD30 pKa = 4.43CVLDD34 pKa = 4.29DD35 pKa = 4.03VDD37 pKa = 4.1RR38 pKa = 11.84ASFAASKK45 pKa = 10.65LKK47 pKa = 10.8VVVRR51 pKa = 11.84NLQYY55 pKa = 10.91KK56 pKa = 7.81GACIKK61 pKa = 10.37CRR63 pKa = 11.84RR64 pKa = 11.84ALAAEE69 pKa = 4.39EE70 pKa = 4.07KK71 pKa = 10.28FKK73 pKa = 11.44YY74 pKa = 9.54LVCVGEE80 pKa = 4.41ADD82 pKa = 4.71LVEE85 pKa = 4.42AMCGTGIVHH94 pKa = 6.67CSVRR98 pKa = 11.84CVSCLALLSASEE110 pKa = 4.1KK111 pKa = 10.62LVAKK115 pKa = 9.83GGCQPFYY122 pKa = 10.77LVRR125 pKa = 11.84HH126 pKa = 6.3LWRR129 pKa = 11.84AQCRR133 pKa = 11.84HH134 pKa = 5.89CRR136 pKa = 11.84TPGCC140 pKa = 4.15

Molecular weight: 15.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2289

101

604

381.5

42.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.417 ± 0.599

2.359 ± 0.822

6.815 ± 0.246

5.505 ± 0.694

4.543 ± 0.564

8.17 ± 0.884

2.053 ± 0.339

3.976 ± 0.853

4.281 ± 0.873

8.475 ± 0.553

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.529 ± 0.238

3.844 ± 0.749

6.291 ± 0.914

4.063 ± 0.555

6.772 ± 0.456

7.165 ± 0.686

7.252 ± 0.501

7.252 ± 0.613

1.18 ± 0.351

3.058 ± 0.313
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski