Simian immunodeficiency virus - agm

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus; Simian immunodeficiency virus

Average proteome isoelectric point is 7.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B4WRK8|A0A1B4WRK8_SIV Vpr protein OS=Simian immunodeficiency virus - agm OX=11726 GN=vpr PE=4 SV=1
MM1 pKa = 7.77ASGGSEE7 pKa = 3.64NRR9 pKa = 11.84EE10 pKa = 3.73RR11 pKa = 11.84RR12 pKa = 11.84PGWLEE17 pKa = 3.13IWDD20 pKa = 4.36LSRR23 pKa = 11.84EE24 pKa = 4.13PWDD27 pKa = 3.12EE28 pKa = 3.74WLRR31 pKa = 11.84DD32 pKa = 3.59MLTDD36 pKa = 4.33LNQEE40 pKa = 3.87ARR42 pKa = 11.84RR43 pKa = 11.84HH44 pKa = 5.41FGRR47 pKa = 11.84EE48 pKa = 3.53LLFQVWNYY56 pKa = 9.32CQEE59 pKa = 3.83EE60 pKa = 4.96GEE62 pKa = 4.26RR63 pKa = 11.84NEE65 pKa = 4.0VPMSEE70 pKa = 3.81RR71 pKa = 11.84AYY73 pKa = 9.28RR74 pKa = 11.84YY75 pKa = 9.88YY76 pKa = 10.85RR77 pKa = 11.84IVQKK81 pKa = 11.07ALFVHH86 pKa = 6.57FRR88 pKa = 11.84CGCRR92 pKa = 11.84RR93 pKa = 11.84RR94 pKa = 11.84TPFEE98 pKa = 4.09PYY100 pKa = 9.24EE101 pKa = 3.85EE102 pKa = 4.16RR103 pKa = 11.84RR104 pKa = 11.84NGEE107 pKa = 3.68GGGRR111 pKa = 11.84AGRR114 pKa = 11.84VPPGLEE120 pKa = 3.91DD121 pKa = 3.15

Molecular weight: 14.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B4WRK1|A0A1B4WRK1_SIV Gag polyprotein OS=Simian immunodeficiency virus - agm OX=11726 GN=gag PE=4 SV=1
MM1 pKa = 7.68EE2 pKa = 5.77KK3 pKa = 11.01GEE5 pKa = 4.44DD6 pKa = 3.73EE7 pKa = 4.44QGGFPLGWKK16 pKa = 8.46TDD18 pKa = 3.51NLQPCNNKK26 pKa = 9.44CFCKK30 pKa = 10.1RR31 pKa = 11.84CCYY34 pKa = 10.12HH35 pKa = 6.61CQLCFLQKK43 pKa = 10.99GLGINYY49 pKa = 9.26APRR52 pKa = 11.84PRR54 pKa = 11.84RR55 pKa = 11.84KK56 pKa = 9.7KK57 pKa = 10.27VILPYY62 pKa = 9.5LHH64 pKa = 7.04RR65 pKa = 11.84SISTRR70 pKa = 11.84GGNSQTTQEE79 pKa = 4.19EE80 pKa = 4.88KK81 pKa = 8.4TTVEE85 pKa = 3.77RR86 pKa = 11.84DD87 pKa = 3.26SRR89 pKa = 11.84PNQASGRR96 pKa = 11.84KK97 pKa = 8.33NLEE100 pKa = 3.61HH101 pKa = 6.81KK102 pKa = 9.45TRR104 pKa = 11.84GSIGARR110 pKa = 11.84DD111 pKa = 3.32

Molecular weight: 12.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

3183

86

1019

397.9

45.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.938 ± 0.356

2.451 ± 0.495

3.739 ± 0.252

7.697 ± 0.797

2.796 ± 0.291

7.886 ± 0.46

2.168 ± 0.314

5.781 ± 0.818

7.289 ± 0.731

8.545 ± 0.379

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.885 ± 0.428

4.555 ± 0.925

5.247 ± 0.539

6.378 ± 0.443

6.283 ± 1.112

4.178 ± 0.242

5.152 ± 0.675

5.592 ± 0.473

3.079 ± 0.246

3.362 ± 0.356
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski