Tropicimonas sediminicola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Tropicimonas

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4801 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A239GXR9|A0A239GXR9_9RHOB Peptide-methionine (R)-S-oxide reductase OS=Tropicimonas sediminicola OX=1031541 GN=SAMN05421757_103157 PE=4 SV=1
MM1 pKa = 7.65LRR3 pKa = 11.84QLVFASLVMLGAGPGTAQMTADD25 pKa = 3.48VRR27 pKa = 11.84FQSGNYY33 pKa = 7.46GTMVSGTITGDD44 pKa = 3.06EE45 pKa = 4.23YY46 pKa = 11.28FDD48 pKa = 3.84YY49 pKa = 11.02RR50 pKa = 11.84LGASGGQQMFVDD62 pKa = 4.76LSVAGTNGNGSVFFNILPPGSDD84 pKa = 2.8GVAIYY89 pKa = 10.44NSSMDD94 pKa = 3.74GNSTTVEE101 pKa = 4.14LPSDD105 pKa = 3.49GTYY108 pKa = 10.13TIRR111 pKa = 11.84VYY113 pKa = 11.57LMGNDD118 pKa = 3.41RR119 pKa = 11.84DD120 pKa = 3.83AGATVGYY127 pKa = 10.2NVDD130 pKa = 4.85LSIQQ134 pKa = 3.33

Molecular weight: 14.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A239IFC1|A0A239IFC1_9RHOB 30S ribosomal protein S5 OS=Tropicimonas sediminicola OX=1031541 GN=rpsE PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.31QPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.34GGRR28 pKa = 11.84KK29 pKa = 8.8ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.07SLSAA44 pKa = 3.93

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4801

0

4801

1534549

30

3803

319.6

34.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.499 ± 0.046

0.882 ± 0.011

5.96 ± 0.035

6.28 ± 0.03

3.763 ± 0.024

8.971 ± 0.037

2.012 ± 0.018

4.992 ± 0.028

2.689 ± 0.025

10.225 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.683 ± 0.017

2.433 ± 0.023

5.276 ± 0.027

2.886 ± 0.019

6.96 ± 0.041

5.194 ± 0.026

5.356 ± 0.024

7.352 ± 0.028

1.417 ± 0.015

2.169 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski