Baumannia cicadellinicola subsp. Homalodisca coagulata

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Gammaproteobacteria incertae sedis; Candidatus Baumannia; Candidatus Baumannia cicadellinicola

Average proteome isoelectric point is 7.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 595 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q1LT37|FABH_BAUCH 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata OX=374463 GN=fabH PE=3 SV=1
MM1 pKa = 7.92LITINEE7 pKa = 4.2CLLLFTLTYY16 pKa = 10.85IMLCIDD22 pKa = 3.52ISLFLISFIFTT33 pKa = 3.61

Molecular weight: 3.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q1LTX4|Q1LTX4_BAUCH N5-carboxyaminoimidazole ribonucleotide synthase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata OX=374463 GN=purK PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.58RR3 pKa = 11.84TFQPSLLKK11 pKa = 10.25RR12 pKa = 11.84HH13 pKa = 5.45RR14 pKa = 11.84THH16 pKa = 7.36GFRR19 pKa = 11.84ARR21 pKa = 11.84IATKK25 pKa = 10.16SGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.07KK38 pKa = 10.04RR39 pKa = 11.84SRR41 pKa = 11.84LTISNRR47 pKa = 3.19

Molecular weight: 5.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

595

0

595

194890

31

1408

327.5

36.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.982 ± 0.092

1.322 ± 0.035

4.436 ± 0.058

5.03 ± 0.091

3.732 ± 0.065

6.102 ± 0.083

2.554 ± 0.04

9.89 ± 0.09

5.908 ± 0.07

10.902 ± 0.108

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.475 ± 0.037

5.688 ± 0.078

3.644 ± 0.048

4.48 ± 0.062

4.985 ± 0.079

6.082 ± 0.051

5.297 ± 0.051

5.842 ± 0.077

1.099 ± 0.04

3.545 ± 0.068
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski