Leptolinea tardivitalis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Leptolinea

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2936 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0P6WZT5|A0A0P6WZT5_9CHLR Uncharacterized protein OS=Leptolinea tardivitalis OX=229920 GN=ADM99_02290 PE=4 SV=1
MM1 pKa = 7.52KK2 pKa = 10.38KK3 pKa = 9.83ADD5 pKa = 3.56FVIRR9 pKa = 11.84VLVLFSMIVSLLAGPGFIPASVVSAKK35 pKa = 10.36PSAQEE40 pKa = 4.38EE41 pKa = 4.86IPTTAPGNVPTDD53 pKa = 3.69EE54 pKa = 4.26PTATPTEE61 pKa = 4.29IPTEE65 pKa = 4.29VPTSVPTEE73 pKa = 4.12VPTEE77 pKa = 3.99EE78 pKa = 4.26PVIIPTDD85 pKa = 3.5IPTEE89 pKa = 4.2IPSPTPTVDD98 pKa = 2.96PSLIVTEE105 pKa = 4.91IPTATPTEE113 pKa = 4.52TVSVTPTITEE123 pKa = 4.38TPTEE127 pKa = 4.25TPEE130 pKa = 5.0SEE132 pKa = 4.19GQPFSHH138 pKa = 7.5LEE140 pKa = 3.65FAALDD145 pKa = 4.04DD146 pKa = 4.07GTPVEE151 pKa = 4.28EE152 pKa = 4.27LVIIGSPNPPEE163 pKa = 5.32GIDD166 pKa = 3.49RR167 pKa = 11.84PISAIAMTEE176 pKa = 4.06GEE178 pKa = 4.67TEE180 pKa = 4.19GLTNPLAVPAYY191 pKa = 8.66NWVYY195 pKa = 10.51GCSSVSAAMVAGFYY209 pKa = 10.91DD210 pKa = 3.34RR211 pKa = 11.84GGYY214 pKa = 8.66PNIYY218 pKa = 9.34TGPTDD223 pKa = 3.75GGVMPMNNSVWPTWTDD239 pKa = 2.97SSGDD243 pKa = 3.69TYY245 pKa = 11.62PNLPLAASKK254 pKa = 10.66QGGWTYY260 pKa = 10.71YY261 pKa = 10.06PWFHH265 pKa = 6.95

Molecular weight: 28.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0P6X7A0|A0A0P6X7A0_9CHLR Uncharacterized protein OS=Leptolinea tardivitalis OX=229920 GN=ADM99_11690 PE=4 SV=1
MM1 pKa = 7.62KK2 pKa = 10.19KK3 pKa = 9.77QAGQAKK9 pKa = 10.17SGLLDD14 pKa = 5.38LISTSPLIGRR24 pKa = 11.84VDD26 pKa = 3.35ANGIHH31 pKa = 6.37LTYY34 pKa = 9.47QTSTRR39 pKa = 11.84LRR41 pKa = 11.84LHH43 pKa = 6.84LPLPHH48 pKa = 7.04PNVSPLEE55 pKa = 4.26AGGARR60 pKa = 11.84LIDD63 pKa = 3.93HH64 pKa = 7.03RR65 pKa = 11.84HH66 pKa = 4.57NPYY69 pKa = 10.48RR70 pKa = 11.84LLPPCIGLRR79 pKa = 3.55

Molecular weight: 8.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2936

0

2936

975580

48

3940

332.3

36.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.252 ± 0.043

0.955 ± 0.015

5.214 ± 0.031

5.881 ± 0.052

4.273 ± 0.036

7.32 ± 0.043

1.871 ± 0.021

7.199 ± 0.044

4.764 ± 0.039

10.4 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.569 ± 0.02

3.994 ± 0.03

4.932 ± 0.031

3.676 ± 0.036

5.102 ± 0.04

6.438 ± 0.039

5.757 ± 0.053

6.946 ± 0.035

1.456 ± 0.024

3.001 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski