Koribacter versatilis (strain Ellin345)

Taxonomy: cellular organisms; Bacteria; Acidobacteria; Acidobacteriia; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter; Candidatus Koribacter versatilis

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4771 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q1IMF6|Q1IMF6_KORVE Polysulphide reductase NrfD OS=Koribacter versatilis (strain Ellin345) OX=204669 GN=Acid345_2943 PE=3 SV=1
MM1 pKa = 7.23RR2 pKa = 11.84QVAAVSFFLVFTAVFSAYY20 pKa = 10.59SQDD23 pKa = 3.02LTQAKK28 pKa = 7.43RR29 pKa = 11.84TPAASGSTQPNVFLTPKK46 pKa = 9.65QYY48 pKa = 10.08PAGPSGVTSIAKK60 pKa = 10.23GDD62 pKa = 3.95FNNDD66 pKa = 2.2SYY68 pKa = 11.77MDD70 pKa = 3.59VAVTNVSGTITVLLGKK86 pKa = 10.62GDD88 pKa = 3.9GTFQAPVSYY97 pKa = 9.09PALSSPVSIAAADD110 pKa = 3.87LNGDD114 pKa = 3.83GKK116 pKa = 11.32LDD118 pKa = 3.73LAVANSGSGSISVFLGNGDD137 pKa = 3.67GTFQSHH143 pKa = 5.6TDD145 pKa = 3.47VAVGTSVQMLTVADD159 pKa = 4.33FNGDD163 pKa = 3.82GKK165 pKa = 10.11PDD167 pKa = 3.66LAVLVDD173 pKa = 3.62GMVSVLIGKK182 pKa = 9.88GDD184 pKa = 3.42ATFNAIGEE192 pKa = 4.39YY193 pKa = 10.51AKK195 pKa = 10.74PCATYY200 pKa = 10.68LATGDD205 pKa = 3.8FNGDD209 pKa = 3.04GKK211 pKa = 9.5TDD213 pKa = 3.18IVAGRR218 pKa = 11.84QCVLLGNGDD227 pKa = 3.82GTFQPPVGSQKK238 pKa = 10.23IGNTVSTAVGDD249 pKa = 3.75INGDD253 pKa = 3.42GKK255 pKa = 11.3LDD257 pKa = 4.71LIEE260 pKa = 5.21GGIGDD265 pKa = 3.73SDD267 pKa = 3.69GTPRR271 pKa = 11.84ALVVVLLGNGDD282 pKa = 3.81GTFQPPQGFFGYY294 pKa = 10.62GSGVQGLLLADD305 pKa = 3.96VNGDD309 pKa = 3.45SHH311 pKa = 8.07PDD313 pKa = 3.04IVLSSSEE320 pKa = 3.88NVEE323 pKa = 4.25VVNGKK328 pKa = 10.39GDD330 pKa = 3.62GTFEE334 pKa = 4.62PGVLYY339 pKa = 9.87PVGNRR344 pKa = 11.84PVAGGLVLSDD354 pKa = 3.25FTGSGRR360 pKa = 11.84LDD362 pKa = 3.54LAVLTSCANPSICGDD377 pKa = 3.65GAVTLLRR384 pKa = 11.84GKK386 pKa = 11.1GDD388 pKa = 3.53GTYY391 pKa = 10.17VAPASYY397 pKa = 10.83YY398 pKa = 9.91IFEE401 pKa = 4.3GDD403 pKa = 3.29EE404 pKa = 4.0RR405 pKa = 11.84FDD407 pKa = 4.82AVGGWVAVGDD417 pKa = 3.82FDD419 pKa = 6.4GDD421 pKa = 3.63GKK423 pKa = 11.35LDD425 pKa = 3.53VLEE428 pKa = 4.66VFDD431 pKa = 3.82TRR433 pKa = 11.84AFISLGNGDD442 pKa = 3.78GTVQTGQRR450 pKa = 11.84YY451 pKa = 7.86YY452 pKa = 10.65QVAYY456 pKa = 10.24QSDD459 pKa = 4.2GAVVGDD465 pKa = 3.76FNGDD469 pKa = 3.33GKK471 pKa = 11.22LDD473 pKa = 3.54AAILHH478 pKa = 6.2SCDD481 pKa = 3.38VFYY484 pKa = 11.14SDD486 pKa = 5.35PGPGNPPPYY495 pKa = 9.24CVSAGSVGVLLGNGNGTWQRR515 pKa = 11.84WPEE518 pKa = 3.8SLYY521 pKa = 10.94FGVGDD526 pKa = 4.18TPTSIATGDD535 pKa = 3.56FNQDD539 pKa = 2.46GKK541 pKa = 11.51LDD543 pKa = 3.94LVVSDD548 pKa = 4.54GANAYY553 pKa = 9.35ILLGNGDD560 pKa = 3.64GTFPVHH566 pKa = 5.63QAYY569 pKa = 7.26PTGAAADD576 pKa = 3.97YY577 pKa = 10.66LNPFLPNAQSVVVGDD592 pKa = 4.12FNGDD596 pKa = 3.53GAPDD600 pKa = 3.59VAVSNSDD607 pKa = 2.9GGIAVLLGNGDD618 pKa = 3.53GTLRR622 pKa = 11.84APQLFPAIKK631 pKa = 9.93SSQSLAIGDD640 pKa = 4.04LNRR643 pKa = 11.84DD644 pKa = 3.17GKK646 pKa = 11.13LDD648 pKa = 3.41IVASDD653 pKa = 3.79GSGSISIFLGNGDD666 pKa = 3.87GTFQTSKK673 pKa = 10.49VYY675 pKa = 10.57AAVGSQSVTVGDD687 pKa = 4.02FNGDD691 pKa = 3.64GILDD695 pKa = 3.78VASGTGHH702 pKa = 5.69TVSLLLGNGDD712 pKa = 4.23GSLQPPVNYY721 pKa = 9.74IVGLSATGLAAGDD734 pKa = 3.98FNGDD738 pKa = 3.17GALDD742 pKa = 3.91LVTEE746 pKa = 4.75DD747 pKa = 5.85FSILLNRR754 pKa = 11.84QGTQLNVQSSRR765 pKa = 11.84NPSNVGQPVTFTVTSAASLPEE786 pKa = 3.98TGLPSGTITLRR797 pKa = 11.84DD798 pKa = 3.42GSTVLGEE805 pKa = 4.24SGVSGVFDD813 pKa = 3.68VKK815 pKa = 11.16VSGLTAGTHH824 pKa = 5.91QITATYY830 pKa = 10.46SGDD833 pKa = 3.73NNFQPHH839 pKa = 4.7TTAILTEE846 pKa = 4.45HH847 pKa = 6.35VGAPATMISPALGSILTSTTVTFAWKK873 pKa = 9.6AAAGASQYY881 pKa = 11.61SLYY884 pKa = 10.85LGTKK888 pKa = 9.4PGRR891 pKa = 11.84DD892 pKa = 3.28DD893 pKa = 3.79LGYY896 pKa = 11.14VNAHH900 pKa = 6.42SSTSATVKK908 pKa = 10.37NLPSTGSSLYY918 pKa = 8.75VTLFSLVGGVYY929 pKa = 10.29YY930 pKa = 10.86SNSYY934 pKa = 9.58TYY936 pKa = 10.48ILPGTPAKK944 pKa = 10.9AKK946 pKa = 7.3MTSPLPGTMLVGKK959 pKa = 9.61DD960 pKa = 3.36ATFTWSHH967 pKa = 5.34GTGVTYY973 pKa = 10.74YY974 pKa = 10.6SLYY977 pKa = 10.9VGTKK981 pKa = 10.14GYY983 pKa = 7.77GTHH986 pKa = 7.45DD987 pKa = 4.19LDD989 pKa = 5.68FINATTTSASVSNLPADD1006 pKa = 3.85GSTIYY1011 pKa = 10.8VQVNSYY1017 pKa = 10.61IDD1019 pKa = 3.86GAWTSQSYY1027 pKa = 8.68TYY1029 pKa = 10.39ISGSGTPAPATMISPTPGSSISGNSATFTWTSGVGVSEE1067 pKa = 4.32FSLYY1071 pKa = 10.9VGTGGVGSHH1080 pKa = 6.79NIAFIEE1086 pKa = 4.25TGTTSATVTGLPATGATIYY1105 pKa = 10.7VRR1107 pKa = 11.84LNSFVNGAWQWVDD1120 pKa = 2.79YY1121 pKa = 10.71SYY1123 pKa = 11.62RR1124 pKa = 11.84NPP1126 pKa = 3.45

Molecular weight: 114.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q1IV87|Q1IV87_KORVE Uncharacterized protein OS=Koribacter versatilis (strain Ellin345) OX=204669 GN=Acid345_0208 PE=4 SV=1
MM1 pKa = 8.0PKK3 pKa = 9.02RR4 pKa = 11.84TFQPNRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SKK15 pKa = 8.4THH17 pKa = 5.66GFRR20 pKa = 11.84TRR22 pKa = 11.84MKK24 pKa = 8.81TKK26 pKa = 10.13SGAAVLSRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.64GRR40 pKa = 11.84KK41 pKa = 8.44RR42 pKa = 11.84VSVSAGYY49 pKa = 10.39RR50 pKa = 11.84DD51 pKa = 3.36

Molecular weight: 5.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4771

0

4771

1677413

37

3121

351.6

38.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.494 ± 0.04

0.903 ± 0.012

5.257 ± 0.027

5.713 ± 0.042

4.053 ± 0.023

7.895 ± 0.039

2.242 ± 0.018

5.205 ± 0.027

4.473 ± 0.029

9.353 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.341 ± 0.018

3.542 ± 0.032

5.016 ± 0.025

3.735 ± 0.022

5.969 ± 0.04

6.252 ± 0.03

5.872 ± 0.038

7.52 ± 0.03

1.359 ± 0.017

2.808 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski