Carnobacterium iners

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Carnobacteriaceae; Carnobacterium

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2071 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1X7NM43|A0A1X7NM43_9LACT 4-hydroxy-tetrahydrodipicolinate synthase OS=Carnobacterium iners OX=1073423 GN=dapA PE=3 SV=1
MM1 pKa = 7.21SHH3 pKa = 7.04DD4 pKa = 3.98HH5 pKa = 6.6DD6 pKa = 4.73HH7 pKa = 7.02EE8 pKa = 4.28EE9 pKa = 4.64HH10 pKa = 5.57EE11 pKa = 5.36HH12 pKa = 5.2ITIIDD17 pKa = 3.63EE18 pKa = 4.13QGNEE22 pKa = 3.91EE23 pKa = 4.41LYY25 pKa = 10.85EE26 pKa = 3.9ILFTFDD32 pKa = 3.6SDD34 pKa = 4.57DD35 pKa = 3.75FEE37 pKa = 5.52KK38 pKa = 10.82SYY40 pKa = 11.56VLVYY44 pKa = 9.75PAGSEE49 pKa = 3.79EE50 pKa = 4.38GEE52 pKa = 4.23EE53 pKa = 4.4VEE55 pKa = 4.2LQAYY59 pKa = 10.03SYY61 pKa = 11.12VEE63 pKa = 4.21KK64 pKa = 10.75EE65 pKa = 4.21DD66 pKa = 4.05GKK68 pKa = 10.98QGDD71 pKa = 4.18LQPIEE76 pKa = 4.5TDD78 pKa = 3.79EE79 pKa = 4.13EE80 pKa = 4.17WDD82 pKa = 3.67MIEE85 pKa = 4.26EE86 pKa = 4.12VLNTFMADD94 pKa = 3.02EE95 pKa = 4.6DD96 pKa = 3.98

Molecular weight: 11.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1X7NPV1|A0A1X7NPV1_9LACT DNA polymerase I OS=Carnobacterium iners OX=1073423 GN=polA PE=3 SV=1
MM1 pKa = 7.92PKK3 pKa = 10.12QKK5 pKa = 7.54THH7 pKa = 6.73RR8 pKa = 11.84GSAKK12 pKa = 9.69RR13 pKa = 11.84FKK15 pKa = 10.09RR16 pKa = 11.84TGNGGLKK23 pKa = 9.46RR24 pKa = 11.84HH25 pKa = 5.83HH26 pKa = 7.17AKK28 pKa = 9.39TSHH31 pKa = 5.29MFANKK36 pKa = 8.87SQKK39 pKa = 8.6QKK41 pKa = 10.83RR42 pKa = 11.84KK43 pKa = 8.61LRR45 pKa = 11.84KK46 pKa = 8.72SAMVSSGDD54 pKa = 3.46MKK56 pKa = 10.9RR57 pKa = 11.84IRR59 pKa = 11.84QQLANWW65 pKa = 3.68

Molecular weight: 7.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2071

0

2071

641523

40

1447

309.8

34.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.717 ± 0.055

0.531 ± 0.014

5.22 ± 0.038

7.515 ± 0.059

4.475 ± 0.038

6.461 ± 0.049

1.716 ± 0.025

8.453 ± 0.049

7.57 ± 0.049

9.921 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.699 ± 0.024

4.874 ± 0.041

3.194 ± 0.031

3.714 ± 0.037

3.665 ± 0.036

6.327 ± 0.039

5.873 ± 0.033

6.685 ± 0.036

0.819 ± 0.017

3.571 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski