Amino acid dipepetide frequency for Sodiomyces alkalinus fusarivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
10.33AlaAla: 10.33 ± 4.009
0.984AlaCys: 0.984 ± 0.53
4.427AlaAsp: 4.427 ± 0.258
7.378AlaGlu: 7.378 ± 3.472
2.459AlaPhe: 2.459 ± 0.803
5.411AlaGly: 5.411 ± 0.276
1.476AlaHis: 1.476 ± 0.269
3.443AlaIle: 3.443 ± 0.792
6.394AlaLys: 6.394 ± 4.002
10.821AlaLeu: 10.821 ± 0.552
0.492AlaMet: 0.492 ± 0.265
2.951AlaAsn: 2.951 ± 2.665
4.427AlaPro: 4.427 ± 0.806
2.459AlaGln: 2.459 ± 1.866
5.411AlaArg: 5.411 ± 1.34
7.378AlaSer: 7.378 ± 1.344
3.443AlaThr: 3.443 ± 2.4
4.919AlaVal: 4.919 ± 0.523
1.476AlaTrp: 1.476 ± 0.269
0.492AlaTyr: 0.492 ± 0.265
0.0AlaXaa: 0.0 ± 0.0
Cys
0.984CysAla: 0.984 ± 0.53
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.492CysGly: 0.492 ± 0.265
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.984CysLys: 0.984 ± 0.53
0.492CysLeu: 0.492 ± 0.265
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.492CysPro: 0.492 ± 0.265
0.984CysGln: 0.984 ± 0.53
0.492CysArg: 0.492 ± 0.265
0.492CysSer: 0.492 ± 0.265
1.476CysThr: 1.476 ± 0.795
1.476CysVal: 1.476 ± 0.795
0.0CysTrp: 0.0 ± 0.0
0.492CysTyr: 0.492 ± 0.265
0.0CysXaa: 0.0 ± 0.0
Asp
2.459AspAla: 2.459 ± 0.803
0.492AspCys: 0.492 ± 0.265
2.459AspAsp: 2.459 ± 0.803
1.968AspGlu: 1.968 ± 0.004
2.951AspPhe: 2.951 ± 0.526
0.984AspGly: 0.984 ± 0.534
1.968AspHis: 1.968 ± 0.004
3.935AspIle: 3.935 ± 1.057
3.443AspLys: 3.443 ± 2.4
6.886AspLeu: 6.886 ± 1.609
0.984AspMet: 0.984 ± 0.534
1.968AspAsn: 1.968 ± 1.06
3.443AspPro: 3.443 ± 0.792
2.951AspGln: 2.951 ± 1.59
1.476AspArg: 1.476 ± 0.795
4.919AspSer: 4.919 ± 3.733
2.951AspThr: 2.951 ± 2.665
4.919AspVal: 4.919 ± 0.523
0.984AspTrp: 0.984 ± 0.53
0.492AspTyr: 0.492 ± 0.265
0.0AspXaa: 0.0 ± 0.0
Glu
6.886GluAla: 6.886 ± 2.673
0.492GluCys: 0.492 ± 0.265
1.968GluAsp: 1.968 ± 0.004
2.459GluGlu: 2.459 ± 0.261
2.459GluPhe: 2.459 ± 0.261
0.984GluGly: 0.984 ± 0.53
0.984GluHis: 0.984 ± 0.53
2.459GluIle: 2.459 ± 0.803
4.427GluLys: 4.427 ± 3.998
8.362GluLeu: 8.362 ± 5.069
0.984GluMet: 0.984 ± 0.53
0.984GluAsn: 0.984 ± 0.534
0.492GluPro: 0.492 ± 0.265
2.459GluGln: 2.459 ± 1.325
1.476GluArg: 1.476 ± 1.333
3.443GluSer: 3.443 ± 2.4
2.459GluThr: 2.459 ± 0.803
4.919GluVal: 4.919 ± 0.523
1.476GluTrp: 1.476 ± 0.795
1.476GluTyr: 1.476 ± 0.795
0.0GluXaa: 0.0 ± 0.0
Phe
2.951PheAla: 2.951 ± 1.601
0.0PheCys: 0.0 ± 0.0
1.476PheAsp: 1.476 ± 0.269
2.459PheGlu: 2.459 ± 1.866
1.968PhePhe: 1.968 ± 0.004
3.443PheGly: 3.443 ± 0.272
0.0PheHis: 0.0 ± 0.0
2.459PheIle: 2.459 ± 1.325
3.935PheLys: 3.935 ± 1.057
5.903PheLeu: 5.903 ± 0.011
1.476PheMet: 1.476 ± 0.795
1.968PheAsn: 1.968 ± 1.06
1.476PhePro: 1.476 ± 0.795
2.459PheGln: 2.459 ± 1.325
0.984PheArg: 0.984 ± 0.534
5.411PheSer: 5.411 ± 1.852
1.476PheThr: 1.476 ± 1.333
5.903PheVal: 5.903 ± 2.117
2.951PheTrp: 2.951 ± 1.59
0.492PheTyr: 0.492 ± 0.265
0.0PheXaa: 0.0 ± 0.0
Gly
1.476GlyAla: 1.476 ± 0.269
0.0GlyCys: 0.0 ± 0.0
2.951GlyAsp: 2.951 ± 0.537
0.492GlyGlu: 0.492 ± 0.265
4.919GlyPhe: 4.919 ± 0.541
1.476GlyGly: 1.476 ± 0.795
1.476GlyHis: 1.476 ± 0.795
1.968GlyIle: 1.968 ± 1.06
1.968GlyLys: 1.968 ± 0.004
5.903GlyLeu: 5.903 ± 1.053
2.459GlyMet: 2.459 ± 0.261
0.984GlyAsn: 0.984 ± 0.534
3.443GlyPro: 3.443 ± 0.272
1.476GlyGln: 1.476 ± 0.795
3.935GlyArg: 3.935 ± 0.007
5.903GlySer: 5.903 ± 3.181
4.919GlyThr: 4.919 ± 0.541
1.968GlyVal: 1.968 ± 0.004
1.476GlyTrp: 1.476 ± 0.269
2.951GlyTyr: 2.951 ± 0.526
0.0GlyXaa: 0.0 ± 0.0
His
0.984HisAla: 0.984 ± 0.53
0.0HisCys: 0.0 ± 0.0
1.968HisAsp: 1.968 ± 0.004
1.476HisGlu: 1.476 ± 0.795
0.0HisPhe: 0.0 ± 0.0
1.476HisGly: 1.476 ± 0.795
1.476HisHis: 1.476 ± 0.795
1.476HisIle: 1.476 ± 0.795
0.492HisLys: 0.492 ± 0.265
1.968HisLeu: 1.968 ± 0.004
0.0HisMet: 0.0 ± 0.0
1.968HisAsn: 1.968 ± 1.06
0.984HisPro: 0.984 ± 0.53
1.476HisGln: 1.476 ± 0.795
1.476HisArg: 1.476 ± 0.269
1.476HisSer: 1.476 ± 0.269
0.492HisThr: 0.492 ± 0.265
1.476HisVal: 1.476 ± 0.795
0.984HisTrp: 0.984 ± 0.53
1.476HisTyr: 1.476 ± 0.269
0.0HisXaa: 0.0 ± 0.0
Ile
5.411IleAla: 5.411 ± 0.788
1.968IleCys: 1.968 ± 1.06
2.459IleAsp: 2.459 ± 0.803
2.459IleGlu: 2.459 ± 0.261
1.968IlePhe: 1.968 ± 1.06
2.459IleGly: 2.459 ± 1.325
1.968IleHis: 1.968 ± 0.004
2.459IleIle: 2.459 ± 0.261
2.459IleLys: 2.459 ± 0.803
7.378IleLeu: 7.378 ± 2.912
0.984IleMet: 0.984 ± 0.534
1.968IleAsn: 1.968 ± 1.06
0.984IlePro: 0.984 ± 0.53
0.984IleGln: 0.984 ± 0.53
3.443IleArg: 3.443 ± 1.336
3.443IleSer: 3.443 ± 1.336
2.459IleThr: 2.459 ± 1.325
2.459IleVal: 2.459 ± 1.325
0.492IleTrp: 0.492 ± 0.265
0.984IleTyr: 0.984 ± 0.53
0.0IleXaa: 0.0 ± 0.0
Lys
8.362LysAla: 8.362 ± 7.197
0.0LysCys: 0.0 ± 0.0
1.968LysAsp: 1.968 ± 1.068
5.411LysGlu: 5.411 ± 4.532
5.903LysPhe: 5.903 ± 3.181
3.935LysGly: 3.935 ± 3.199
0.492LysHis: 0.492 ± 0.265
2.459LysIle: 2.459 ± 1.866
4.427LysLys: 4.427 ± 2.934
3.443LysLeu: 3.443 ± 2.4
0.492LysMet: 0.492 ± 0.799
1.476LysAsn: 1.476 ± 1.333
0.984LysPro: 0.984 ± 1.598
1.968LysGln: 1.968 ± 1.068
3.443LysArg: 3.443 ± 0.792
4.919LysSer: 4.919 ± 2.669
0.984LysThr: 0.984 ± 0.53
7.378LysVal: 7.378 ± 1.848
0.984LysTrp: 0.984 ± 0.534
2.951LysTyr: 2.951 ± 0.526
0.0LysXaa: 0.0 ± 0.0
Leu
9.346LeuAla: 9.346 ± 1.347
0.984LeuCys: 0.984 ± 0.53
9.346LeuAsp: 9.346 ± 0.283
3.935LeuGlu: 3.935 ± 0.007
3.935LeuPhe: 3.935 ± 0.007
8.854LeuGly: 8.854 ± 3.707
1.476LeuHis: 1.476 ± 0.269
5.411LeuIle: 5.411 ± 0.788
5.903LeuLys: 5.903 ± 4.267
10.33LeuLeu: 10.33 ± 5.566
1.968LeuMet: 1.968 ± 0.004
3.443LeuAsn: 3.443 ± 0.272
3.935LeuPro: 3.935 ± 2.121
2.951LeuGln: 2.951 ± 1.601
7.87LeuArg: 7.87 ± 1.079
12.297LeuSer: 12.297 ± 0.821
7.87LeuThr: 7.87 ± 1.079
8.362LeuVal: 8.362 ± 1.314
1.476LeuTrp: 1.476 ± 0.795
0.492LeuTyr: 0.492 ± 0.265
0.0LeuXaa: 0.0 ± 0.0
Met
1.968MetAla: 1.968 ± 1.06
0.0MetCys: 0.0 ± 0.0
2.459MetAsp: 2.459 ± 0.803
1.968MetGlu: 1.968 ± 0.004
0.492MetPhe: 0.492 ± 0.265
0.492MetGly: 0.492 ± 0.265
1.476MetHis: 1.476 ± 0.795
0.984MetIle: 0.984 ± 0.53
1.476MetLys: 1.476 ± 0.269
0.984MetLeu: 0.984 ± 0.534
0.492MetMet: 0.492 ± 0.265
0.0MetAsn: 0.0 ± 0.0
0.492MetPro: 0.492 ± 0.265
0.492MetGln: 0.492 ± 0.265
0.492MetArg: 0.492 ± 0.265
0.984MetSer: 0.984 ± 0.534
0.492MetThr: 0.492 ± 0.265
1.968MetVal: 1.968 ± 2.132
0.984MetTrp: 0.984 ± 0.53
0.984MetTyr: 0.984 ± 0.53
0.0MetXaa: 0.0 ± 0.0
Asn
2.459AsnAla: 2.459 ± 2.93
0.492AsnCys: 0.492 ± 0.265
0.492AsnAsp: 0.492 ± 0.265
1.476AsnGlu: 1.476 ± 0.269
1.968AsnPhe: 1.968 ± 0.004
0.984AsnGly: 0.984 ± 0.53
1.476AsnHis: 1.476 ± 0.795
0.984AsnIle: 0.984 ± 0.53
1.476AsnLys: 1.476 ± 1.333
3.443AsnLeu: 3.443 ± 0.792
0.0AsnMet: 0.0 ± 0.0
0.492AsnAsn: 0.492 ± 0.799
1.476AsnPro: 1.476 ± 0.795
0.984AsnGln: 0.984 ± 0.534
1.968AsnArg: 1.968 ± 0.004
2.459AsnSer: 2.459 ± 0.261
2.951AsnThr: 2.951 ± 1.59
0.492AsnVal: 0.492 ± 0.799
0.492AsnTrp: 0.492 ± 0.799
1.968AsnTyr: 1.968 ± 1.06
0.0AsnXaa: 0.0 ± 0.0
Pro
1.476ProAla: 1.476 ± 0.269
0.0ProCys: 0.0 ± 0.0
5.903ProAsp: 5.903 ± 2.117
1.968ProGlu: 1.968 ± 0.004
1.968ProPhe: 1.968 ± 0.004
0.492ProGly: 0.492 ± 0.799
0.492ProHis: 0.492 ± 0.265
3.935ProIle: 3.935 ± 1.057
1.476ProLys: 1.476 ± 0.269
5.903ProLeu: 5.903 ± 1.053
0.492ProMet: 0.492 ± 0.265
1.476ProAsn: 1.476 ± 0.795
1.968ProPro: 1.968 ± 1.06
0.0ProGln: 0.0 ± 0.0
2.459ProArg: 2.459 ± 1.325
4.919ProSer: 4.919 ± 0.523
2.459ProThr: 2.459 ± 1.325
4.427ProVal: 4.427 ± 0.806
0.0ProTrp: 0.0 ± 0.0
0.984ProTyr: 0.984 ± 0.53
0.0ProXaa: 0.0 ± 0.0
Gln
4.427GlnAla: 4.427 ± 0.806
0.0GlnCys: 0.0 ± 0.0
0.984GlnAsp: 0.984 ± 0.53
1.476GlnGlu: 1.476 ± 0.795
0.984GlnPhe: 0.984 ± 0.53
1.476GlnGly: 1.476 ± 0.795
0.492GlnHis: 0.492 ± 0.265
2.459GlnIle: 2.459 ± 1.325
1.968GlnLys: 1.968 ± 1.068
1.476GlnLeu: 1.476 ± 0.269
0.492GlnMet: 0.492 ± 0.799
0.984GlnAsn: 0.984 ± 0.534
0.984GlnPro: 0.984 ± 0.534
1.476GlnGln: 1.476 ± 0.269
1.476GlnArg: 1.476 ± 0.795
3.443GlnSer: 3.443 ± 1.336
0.984GlnThr: 0.984 ± 0.53
2.459GlnVal: 2.459 ± 0.261
0.984GlnTrp: 0.984 ± 0.53
0.984GlnTyr: 0.984 ± 0.53
0.0GlnXaa: 0.0 ± 0.0
Arg
4.919ArgAla: 4.919 ± 4.797
1.476ArgCys: 1.476 ± 0.795
0.984ArgAsp: 0.984 ± 0.53
3.443ArgGlu: 3.443 ± 0.272
0.984ArgPhe: 0.984 ± 0.53
1.476ArgGly: 1.476 ± 0.269
0.984ArgHis: 0.984 ± 0.53
2.951ArgIle: 2.951 ± 0.537
6.394ArgLys: 6.394 ± 0.254
6.886ArgLeu: 6.886 ± 1.583
2.951ArgMet: 2.951 ± 0.537
0.984ArgAsn: 0.984 ± 0.534
2.459ArgPro: 2.459 ± 0.261
1.476ArgGln: 1.476 ± 0.269
3.443ArgArg: 3.443 ± 0.792
2.951ArgSer: 2.951 ± 0.537
6.394ArgThr: 6.394 ± 1.318
2.951ArgVal: 2.951 ± 0.526
1.476ArgTrp: 1.476 ± 0.795
1.968ArgTyr: 1.968 ± 1.06
0.0ArgXaa: 0.0 ± 0.0
Ser
5.411SerAla: 5.411 ± 1.34
0.0SerCys: 0.0 ± 0.0
5.903SerAsp: 5.903 ± 1.075
4.427SerGlu: 4.427 ± 3.998
4.427SerPhe: 4.427 ± 1.322
4.919SerGly: 4.919 ± 1.605
1.968SerHis: 1.968 ± 0.004
1.968SerIle: 1.968 ± 1.068
5.903SerLys: 5.903 ± 4.267
9.346SerLeu: 9.346 ± 0.283
1.476SerMet: 1.476 ± 0.795
0.984SerAsn: 0.984 ± 0.534
5.411SerPro: 5.411 ± 0.788
0.984SerGln: 0.984 ± 0.534
6.394SerArg: 6.394 ± 0.254
7.378SerSer: 7.378 ± 1.848
9.346SerThr: 9.346 ± 0.781
8.362SerVal: 8.362 ± 1.877
1.968SerTrp: 1.968 ± 0.004
3.443SerTyr: 3.443 ± 1.855
0.0SerXaa: 0.0 ± 0.0
Thr
5.903ThrAla: 5.903 ± 1.053
0.0ThrCys: 0.0 ± 0.0
2.459ThrAsp: 2.459 ± 2.93
2.951ThrGlu: 2.951 ± 0.526
5.903ThrPhe: 5.903 ± 2.139
5.903ThrGly: 5.903 ± 3.181
0.984ThrHis: 0.984 ± 0.53
1.968ThrIle: 1.968 ± 0.004
0.492ThrLys: 0.492 ± 0.265
6.394ThrLeu: 6.394 ± 1.874
1.476ThrMet: 1.476 ± 0.678
0.984ThrAsn: 0.984 ± 0.53
3.935ThrPro: 3.935 ± 0.007
0.492ThrGln: 0.492 ± 0.265
2.459ThrArg: 2.459 ± 0.261
6.886ThrSer: 6.886 ± 1.609
2.951ThrThr: 2.951 ± 0.526
5.411ThrVal: 5.411 ± 1.852
0.0ThrTrp: 0.0 ± 0.0
1.968ThrTyr: 1.968 ± 0.004
0.0ThrXaa: 0.0 ± 0.0
Val
6.886ValAla: 6.886 ± 1.583
0.0ValCys: 0.0 ± 0.0
1.968ValAsp: 1.968 ± 1.068
3.443ValGlu: 3.443 ± 0.272
2.459ValPhe: 2.459 ± 1.325
4.427ValGly: 4.427 ± 0.258
2.459ValHis: 2.459 ± 1.325
6.394ValIle: 6.394 ± 2.382
5.411ValLys: 5.411 ± 2.404
9.346ValLeu: 9.346 ± 1.845
1.476ValMet: 1.476 ± 0.428
3.443ValAsn: 3.443 ± 0.792
2.951ValPro: 2.951 ± 1.59
1.968ValGln: 1.968 ± 0.004
6.394ValArg: 6.394 ± 1.318
7.378ValSer: 7.378 ± 2.408
3.443ValThr: 3.443 ± 0.792
4.919ValVal: 4.919 ± 1.587
1.476ValTrp: 1.476 ± 0.795
1.476ValTyr: 1.476 ± 0.269
0.0ValXaa: 0.0 ± 0.0
Trp
0.984TrpAla: 0.984 ± 0.53
0.492TrpCys: 0.492 ± 0.265
0.0TrpAsp: 0.0 ± 0.0
1.968TrpGlu: 1.968 ± 0.004
2.951TrpPhe: 2.951 ± 0.526
1.968TrpGly: 1.968 ± 0.004
0.492TrpHis: 0.492 ± 0.265
0.492TrpIle: 0.492 ± 0.265
2.459TrpLys: 2.459 ± 1.325
0.492TrpLeu: 0.492 ± 0.265
0.0TrpMet: 0.0 ± 0.0
0.492TrpAsn: 0.492 ± 0.265
1.476TrpPro: 1.476 ± 0.795
0.492TrpGln: 0.492 ± 0.265
0.492TrpArg: 0.492 ± 0.265
0.984TrpSer: 0.984 ± 0.53
1.476TrpThr: 1.476 ± 0.269
1.968TrpVal: 1.968 ± 1.06
0.984TrpTrp: 0.984 ± 0.534
0.984TrpTyr: 0.984 ± 0.534
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.951TyrAla: 2.951 ± 0.526
1.476TyrCys: 1.476 ± 0.795
2.459TyrAsp: 2.459 ± 0.261
0.492TyrGlu: 0.492 ± 0.265
0.492TyrPhe: 0.492 ± 0.265
0.492TyrGly: 0.492 ± 0.265
0.984TyrHis: 0.984 ± 0.53
0.984TyrIle: 0.984 ± 0.53
0.492TyrLys: 0.492 ± 0.265
4.427TyrLeu: 4.427 ± 1.322
0.492TyrMet: 0.492 ± 0.265
0.984TyrAsn: 0.984 ± 0.53
0.984TyrPro: 0.984 ± 0.53
1.476TyrGln: 1.476 ± 0.269
1.968TyrArg: 1.968 ± 0.004
2.951TyrSer: 2.951 ± 1.59
0.492TyrThr: 0.492 ± 0.265
1.476TyrVal: 1.476 ± 0.269
0.984TyrTrp: 0.984 ± 0.53
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2034 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski