Jatropha mosaic India virus-[Lucknow]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Jatropha mosaic India virus

Average proteome isoelectric point is 8.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E2FZU7|E2FZU7_9GEMI Capsid protein OS=Jatropha mosaic India virus-[Lucknow] OX=569949 GN=AV1 PE=3 SV=1
MM1 pKa = 8.06WDD3 pKa = 3.35PLLNEE8 pKa = 4.99FPDD11 pKa = 3.86SVHH14 pKa = 6.81GFRR17 pKa = 11.84CMLALKK23 pKa = 9.76YY24 pKa = 10.16LQLVEE29 pKa = 4.41STYY32 pKa = 11.41SPDD35 pKa = 3.14TLGYY39 pKa = 10.84DD40 pKa = 4.83LIRR43 pKa = 11.84DD44 pKa = 4.71LISVIRR50 pKa = 11.84ARR52 pKa = 11.84SYY54 pKa = 10.28VEE56 pKa = 3.27ATRR59 pKa = 11.84RR60 pKa = 11.84YY61 pKa = 8.39HH62 pKa = 6.31HH63 pKa = 6.62FNSRR67 pKa = 11.84LEE69 pKa = 4.21GTSPSDD75 pKa = 3.47LRR77 pKa = 11.84QLIQQPCFCLHH88 pKa = 6.9CPRR91 pKa = 11.84HH92 pKa = 5.61QKK94 pKa = 9.39TSLDD98 pKa = 3.79KK99 pKa = 10.61QAHH102 pKa = 5.06EE103 pKa = 5.14SEE105 pKa = 4.26AQMVQDD111 pKa = 3.71VQKK114 pKa = 10.17PRR116 pKa = 11.84CSS118 pKa = 3.2

Molecular weight: 13.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E2FZU8|E2FZU8_9GEMI Replication enhancer OS=Jatropha mosaic India virus-[Lucknow] OX=569949 GN=AC3 PE=3 SV=1
MM1 pKa = 7.7SKK3 pKa = 10.44RR4 pKa = 11.84PGDD7 pKa = 3.89IIISTPASKK16 pKa = 10.31VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LIFDD24 pKa = 3.31SLYY27 pKa = 10.61SSRR30 pKa = 11.84ASVFTVRR37 pKa = 11.84VTKK40 pKa = 10.46RR41 pKa = 11.84QAWTNRR47 pKa = 11.84PMNRR51 pKa = 11.84KK52 pKa = 7.93PRR54 pKa = 11.84WYY56 pKa = 10.73RR57 pKa = 11.84MFRR60 pKa = 11.84SPDD63 pKa = 3.23VPRR66 pKa = 11.84GCEE69 pKa = 4.34GPCKK73 pKa = 10.01VQSFEE78 pKa = 4.02SRR80 pKa = 11.84HH81 pKa = 5.54DD82 pKa = 3.51VVHH85 pKa = 6.75IGKK88 pKa = 9.41VMCISDD94 pKa = 3.53VTRR97 pKa = 11.84GVGLTHH103 pKa = 7.14RR104 pKa = 11.84VGKK107 pKa = 9.66RR108 pKa = 11.84FCVKK112 pKa = 9.92SVYY115 pKa = 10.24ILGKK119 pKa = 9.73VWMDD123 pKa = 3.27EE124 pKa = 4.06NIKK127 pKa = 9.31TKK129 pKa = 10.6NHH131 pKa = 5.78TNSVMFFLVRR141 pKa = 11.84DD142 pKa = 3.84RR143 pKa = 11.84RR144 pKa = 11.84PVDD147 pKa = 3.13KK148 pKa = 10.28PQDD151 pKa = 3.56FGEE154 pKa = 4.33VFNMFDD160 pKa = 4.29NEE162 pKa = 4.11PSTATVKK169 pKa = 10.61NMHH172 pKa = 7.0RR173 pKa = 11.84DD174 pKa = 3.31RR175 pKa = 11.84YY176 pKa = 9.22QVLRR180 pKa = 11.84KK181 pKa = 9.45WSATVTGGQYY191 pKa = 10.85ASKK194 pKa = 9.9EE195 pKa = 3.88QALVRR200 pKa = 11.84RR201 pKa = 11.84FFRR204 pKa = 11.84VNNYY208 pKa = 7.82VVYY211 pKa = 9.96NQQEE215 pKa = 3.8AGKK218 pKa = 10.1YY219 pKa = 8.23EE220 pKa = 4.02NHH222 pKa = 6.47TEE224 pKa = 3.99NALMLYY230 pKa = 7.52MACTHH235 pKa = 7.06ASNPVYY241 pKa = 9.86ATLKK245 pKa = 9.47IRR247 pKa = 11.84IYY249 pKa = 10.67FYY251 pKa = 11.26DD252 pKa = 3.51SVSNN256 pKa = 3.9

Molecular weight: 29.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1090

100

347

181.7

20.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.321 ± 0.524

2.11 ± 0.397

5.413 ± 0.697

4.404 ± 0.514

4.312 ± 0.584

5.321 ± 0.55

3.853 ± 0.71

4.954 ± 0.696

5.413 ± 1.192

7.706 ± 1.192

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.569 ± 0.558

5.229 ± 0.584

5.78 ± 0.62

4.22 ± 0.641

7.431 ± 1.176

8.44 ± 1.067

6.239 ± 0.951

6.055 ± 1.331

1.56 ± 0.201

3.67 ± 0.464
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski