Cauliflower mosaic virus (strain CM-1841) (CaMV)

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Caulimovirus; Cauliflower mosaic virus

Average proteome isoelectric point is 7.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P03546|MVP_CAMVC Movement protein OS=Cauliflower mosaic virus (strain CM-1841) OX=10644 GN=ORF I PE=1 SV=1
MM1 pKa = 7.73AEE3 pKa = 4.5SILDD7 pKa = 3.48RR8 pKa = 11.84TINRR12 pKa = 11.84FWYY15 pKa = 10.5NLGEE19 pKa = 4.56DD20 pKa = 4.62CLSEE24 pKa = 4.25SQFDD28 pKa = 3.63LMIRR32 pKa = 11.84LMEE35 pKa = 4.36EE36 pKa = 4.14SLDD39 pKa = 3.54GDD41 pKa = 3.95QIIDD45 pKa = 3.92LTSLPSDD52 pKa = 3.49NLQVEE57 pKa = 4.7QVMTTTDD64 pKa = 3.35DD65 pKa = 4.2SISEE69 pKa = 4.02EE70 pKa = 4.57SEE72 pKa = 3.64FLLAIGEE79 pKa = 4.16ISEE82 pKa = 4.84DD83 pKa = 3.61EE84 pKa = 4.21SDD86 pKa = 3.66SGEE89 pKa = 4.04EE90 pKa = 4.03PEE92 pKa = 4.39FEE94 pKa = 4.26QVRR97 pKa = 11.84MDD99 pKa = 3.4RR100 pKa = 11.84TGGTEE105 pKa = 3.59IPKK108 pKa = 10.47EE109 pKa = 3.95EE110 pKa = 4.82DD111 pKa = 3.31GEE113 pKa = 4.73GPSRR117 pKa = 11.84YY118 pKa = 9.29NEE120 pKa = 4.24RR121 pKa = 11.84KK122 pKa = 9.81RR123 pKa = 11.84KK124 pKa = 7.47TPEE127 pKa = 3.29DD128 pKa = 4.14RR129 pKa = 11.84YY130 pKa = 10.74FPTQPKK136 pKa = 8.96TIPGQKK142 pKa = 6.7QTSMGMLNIDD152 pKa = 3.45CQINRR157 pKa = 11.84RR158 pKa = 11.84TLIDD162 pKa = 3.36DD163 pKa = 4.03WAAEE167 pKa = 3.64IGLIVKK173 pKa = 7.4TNRR176 pKa = 11.84EE177 pKa = 4.21DD178 pKa = 3.71YY179 pKa = 10.97LDD181 pKa = 4.59PEE183 pKa = 4.86TILLLMEE190 pKa = 5.35HH191 pKa = 6.19KK192 pKa = 9.65TSGIAKK198 pKa = 8.99EE199 pKa = 4.39LIRR202 pKa = 11.84NTRR205 pKa = 11.84WNRR208 pKa = 11.84TTGDD212 pKa = 3.23IIEE215 pKa = 4.15QVINAMYY222 pKa = 10.9TMFLGLNYY230 pKa = 10.01SDD232 pKa = 4.16NKK234 pKa = 9.76VAEE237 pKa = 4.95KK238 pKa = 9.96IDD240 pKa = 3.71EE241 pKa = 4.11QEE243 pKa = 3.87KK244 pKa = 10.81AKK246 pKa = 10.57IRR248 pKa = 11.84MTKK251 pKa = 10.09LQLFDD256 pKa = 2.96ICYY259 pKa = 10.29LEE261 pKa = 5.62EE262 pKa = 4.13FTCDD266 pKa = 3.39YY267 pKa = 9.76EE268 pKa = 5.13KK269 pKa = 11.56NMYY272 pKa = 7.76KK273 pKa = 9.52TEE275 pKa = 3.96MADD278 pKa = 3.35FPGYY282 pKa = 10.03INQYY286 pKa = 9.44LSKK289 pKa = 10.49IPIIGEE295 pKa = 3.82KK296 pKa = 10.07ALTRR300 pKa = 11.84FRR302 pKa = 11.84HH303 pKa = 5.1EE304 pKa = 4.41ANGTSIYY311 pKa = 10.98SLGFAAKK318 pKa = 9.37IVKK321 pKa = 10.16EE322 pKa = 4.25EE323 pKa = 3.98LSKK326 pKa = 10.93ICDD329 pKa = 3.44LSKK332 pKa = 10.64KK333 pKa = 8.32QKK335 pKa = 10.13KK336 pKa = 9.23LKK338 pKa = 10.43KK339 pKa = 9.92FNKK342 pKa = 8.29KK343 pKa = 9.46CCSIGEE349 pKa = 4.05ASVEE353 pKa = 3.97YY354 pKa = 10.54GGKK357 pKa = 8.25KK358 pKa = 7.83TSKK361 pKa = 9.95KK362 pKa = 9.95KK363 pKa = 7.8YY364 pKa = 7.47HH365 pKa = 5.97KK366 pKa = 9.95RR367 pKa = 11.84YY368 pKa = 7.74KK369 pKa = 10.15KK370 pKa = 9.84RR371 pKa = 11.84YY372 pKa = 8.78KK373 pKa = 10.27VYY375 pKa = 10.7KK376 pKa = 9.62PYY378 pKa = 10.61KK379 pKa = 8.37KK380 pKa = 9.95KK381 pKa = 10.76KK382 pKa = 8.5KK383 pKa = 9.57FRR385 pKa = 11.84SGKK388 pKa = 8.01YY389 pKa = 8.61FKK391 pKa = 10.48PKK393 pKa = 9.37EE394 pKa = 4.11KK395 pKa = 10.27KK396 pKa = 8.74GSKK399 pKa = 9.49RR400 pKa = 11.84KK401 pKa = 9.66YY402 pKa = 9.14CPKK405 pKa = 10.31GKK407 pKa = 9.77KK408 pKa = 9.42DD409 pKa = 3.64CRR411 pKa = 11.84CWICNIEE418 pKa = 3.72GHH420 pKa = 5.91YY421 pKa = 11.26ANEE424 pKa = 4.29CPNRR428 pKa = 11.84QSSEE432 pKa = 3.98KK433 pKa = 10.95AHH435 pKa = 6.69ILQQAEE441 pKa = 4.19NLGLQPVEE449 pKa = 4.07EE450 pKa = 4.93PYY452 pKa = 11.05EE453 pKa = 4.26GVQEE457 pKa = 4.31VFILEE462 pKa = 4.23YY463 pKa = 10.61KK464 pKa = 10.49EE465 pKa = 4.56EE466 pKa = 4.1EE467 pKa = 4.44EE468 pKa = 4.21EE469 pKa = 4.39TSTEE473 pKa = 3.97EE474 pKa = 4.75SDD476 pKa = 5.02DD477 pKa = 3.84EE478 pKa = 4.97SSTSEE483 pKa = 5.36DD484 pKa = 3.35SDD486 pKa = 3.84SDD488 pKa = 3.58

Molecular weight: 56.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P03552|VAP_CAMVC Virion-associated protein OS=Cauliflower mosaic virus (strain CM-1841) OX=10644 GN=ORF III PE=3 SV=1
MM1 pKa = 7.71SITGQPHH8 pKa = 6.08VYY10 pKa = 10.34KK11 pKa = 10.15KK12 pKa = 10.26DD13 pKa = 3.28TIIRR17 pKa = 11.84LKK19 pKa = 10.51PLSLNSNNRR28 pKa = 11.84SYY30 pKa = 11.62VFSSSKK36 pKa = 11.2GNIQNIINHH45 pKa = 6.59LNNLNEE51 pKa = 3.99IVGRR55 pKa = 11.84SLLGIWKK62 pKa = 9.14INSYY66 pKa = 10.68FGLSKK71 pKa = 10.89DD72 pKa = 3.5PSEE75 pKa = 4.67SKK77 pKa = 10.77SKK79 pKa = 10.86NPSVFNTAKK88 pKa = 10.78NIFKK92 pKa = 10.78SRR94 pKa = 11.84GVDD97 pKa = 3.2YY98 pKa = 10.92SSQLKK103 pKa = 8.92EE104 pKa = 4.12VKK106 pKa = 10.33SLLEE110 pKa = 4.07AQNTRR115 pKa = 11.84IKK117 pKa = 10.7NLEE120 pKa = 3.9NAIQSLDD127 pKa = 3.51NKK129 pKa = 10.23IEE131 pKa = 4.11PEE133 pKa = 4.1PLTKK137 pKa = 10.77EE138 pKa = 3.86EE139 pKa = 4.05VKK141 pKa = 10.52EE142 pKa = 3.89LKK144 pKa = 10.55EE145 pKa = 4.32SINSIKK151 pKa = 10.61EE152 pKa = 3.7GLKK155 pKa = 10.77NIIGG159 pKa = 3.69

Molecular weight: 17.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2302

129

679

383.7

43.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.039 ± 0.733

1.564 ± 0.273

5.3 ± 0.511

8.036 ± 1.12

3.779 ± 0.583

5.083 ± 0.373

2.042 ± 0.488

8.08 ± 0.428

10.556 ± 0.457

8.558 ± 0.598

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.215 ± 0.244

5.995 ± 1.141

4.605 ± 0.662

4.605 ± 0.316

3.736 ± 0.454

7.124 ± 0.838

5.343 ± 0.559

4.387 ± 0.579

0.869 ± 0.168

3.084 ± 0.405
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski