Aconitum latent virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus

Average proteome isoelectric point is 7.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q91UJ1|Q91UJ1_9VIRU Movement protein TGB2 OS=Aconitum latent virus OX=101764 GN=ORF3 PE=3 SV=1
MM1 pKa = 7.31NLVLICGLLSFAIALYY17 pKa = 10.06FLSINDD23 pKa = 4.01RR24 pKa = 11.84GDD26 pKa = 3.39CFVIITGEE34 pKa = 4.05SIRR37 pKa = 11.84IQGCHH42 pKa = 5.74INRR45 pKa = 11.84EE46 pKa = 4.24FNEE49 pKa = 4.12GLKK52 pKa = 10.62GLRR55 pKa = 11.84ALNNEE60 pKa = 4.44CLL62 pKa = 3.7

Molecular weight: 6.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q91UI9|Q91UI9_9VIRU Capsid protein OS=Aconitum latent virus OX=101764 GN=ORF5 PE=3 SV=1
MM1 pKa = 7.07KK2 pKa = 9.36WWRR5 pKa = 11.84EE6 pKa = 3.89VALLLYY12 pKa = 10.69ADD14 pKa = 5.98FINKK18 pKa = 9.65CGRR21 pKa = 11.84AEE23 pKa = 3.86FALCVDD29 pKa = 4.0IALASARR36 pKa = 11.84PVGGGTSSYY45 pKa = 10.5ARR47 pKa = 11.84KK48 pKa = 9.62RR49 pKa = 11.84RR50 pKa = 11.84AKK52 pKa = 10.98AMGRR56 pKa = 11.84CHH58 pKa = 6.61RR59 pKa = 11.84CFRR62 pKa = 11.84VWPPTYY68 pKa = 9.09FTKK71 pKa = 10.62RR72 pKa = 11.84CDD74 pKa = 4.51GINCRR79 pKa = 11.84PGISHH84 pKa = 6.58NLSVEE89 pKa = 3.8RR90 pKa = 11.84RR91 pKa = 11.84IKK93 pKa = 10.85LGVTAVIPSRR103 pKa = 11.84PNN105 pKa = 2.87

Molecular weight: 11.87 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2795

62

1986

465.8

52.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.37 ± 0.759

2.97 ± 0.427

5.116 ± 0.48

6.44 ± 0.563

4.973 ± 0.553

6.369 ± 0.385

2.54 ± 0.218

5.259 ± 0.542

5.51 ± 0.43

10.304 ± 0.731

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.004 ± 0.282

4.365 ± 0.88

4.186 ± 0.5

2.97 ± 0.413

6.869 ± 0.553

6.512 ± 0.573

5.367 ± 0.449

6.261 ± 0.427

1.145 ± 0.156

3.47 ± 0.454
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski