Dickeya phage vB_DsoM_AD1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Alexandravirus; Dickeya virus AD1

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 330 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A384ZYF9|A0A384ZYF9_9CAUD Putative DNA primase OS=Dickeya phage vB_DsoM_AD1 OX=2283029 GN=AD1_223 PE=4 SV=1
MM1 pKa = 7.69GDD3 pKa = 3.39EE4 pKa = 5.12DD5 pKa = 5.32FDD7 pKa = 5.06FEE9 pKa = 5.49FGADD13 pKa = 4.09DD14 pKa = 4.45DD15 pKa = 4.13SGYY18 pKa = 11.32YY19 pKa = 9.29IDD21 pKa = 5.41QPLHH25 pKa = 6.11MIVDD29 pKa = 3.74GDD31 pKa = 3.81EE32 pKa = 4.85RR33 pKa = 11.84ILGHH37 pKa = 7.21LIDD40 pKa = 5.04SGDD43 pKa = 3.53TVLMYY48 pKa = 10.77GGYY51 pKa = 10.11YY52 pKa = 10.17VVDD55 pKa = 4.27DD56 pKa = 5.07EE57 pKa = 5.13EE58 pKa = 6.44DD59 pKa = 3.55PDD61 pKa = 3.94AATLIEE67 pKa = 4.26VPVFKK72 pKa = 10.65VDD74 pKa = 3.71PLADD78 pKa = 3.03IAIVMNADD86 pKa = 3.5EE87 pKa = 4.46MRR89 pKa = 11.84LRR91 pKa = 11.84HH92 pKa = 5.99NGEE95 pKa = 4.23LLTLAFINDD104 pKa = 3.07IPLVVKK110 pKa = 7.89STRR113 pKa = 11.84HH114 pKa = 4.25

Molecular weight: 12.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A384ZY35|A0A384ZY35_9CAUD Putative tail protein OS=Dickeya phage vB_DsoM_AD1 OX=2283029 GN=AD1_108 PE=4 SV=1
MM1 pKa = 6.66GQKK4 pKa = 10.47AIRR7 pKa = 11.84LGTDD11 pKa = 3.55LSTGHH16 pKa = 6.4NGYY19 pKa = 10.08FPVVPAQASSNVLVNGKK36 pKa = 10.4GSVRR40 pKa = 11.84QGDD43 pKa = 4.03SYY45 pKa = 11.24RR46 pKa = 11.84PHH48 pKa = 7.32WKK50 pKa = 9.43PKK52 pKa = 9.95KK53 pKa = 9.46PPHH56 pKa = 5.79TGKK59 pKa = 8.83ATSSSSVRR67 pKa = 11.84VNGKK71 pKa = 7.85PAQRR75 pKa = 11.84AGDD78 pKa = 3.94ANSCGDD84 pKa = 3.53TASNGSSNVRR94 pKa = 11.84FGG96 pKa = 3.28

Molecular weight: 9.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

330

0

330

81997

41

1948

248.5

27.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.488 ± 0.142

1.163 ± 0.058

6.877 ± 0.163

6.183 ± 0.179

3.762 ± 0.075

6.551 ± 0.144

2.056 ± 0.083

5.426 ± 0.079

6.279 ± 0.255

8.192 ± 0.125

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.831 ± 0.087

4.592 ± 0.088

4.332 ± 0.086

3.759 ± 0.095

5.347 ± 0.125

6.25 ± 0.12

6.129 ± 0.184

7.192 ± 0.105

1.148 ± 0.05

3.443 ± 0.091
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski