Devosia enhydra

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3974 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1K2I1R1|A0A1K2I1R1_9RHIZ Uncharacterized conserved protein DUF952 family OS=Devosia enhydra OX=665118 GN=SAMN02983003_3443 PE=4 SV=1
MM1 pKa = 7.79RR2 pKa = 11.84PHH4 pKa = 7.2ALLLGMNAALLLSTAVSAADD24 pKa = 4.73AITPAPVMPATVVFEE39 pKa = 4.27EE40 pKa = 4.36PALFSLTIEE49 pKa = 4.59GGVSAFGMPSTDD61 pKa = 3.42TIGTTNIGGLNGDD74 pKa = 3.54EE75 pKa = 4.26VLFEE79 pKa = 4.84GLDD82 pKa = 3.55DD83 pKa = 4.04MLFGGNLAAKK93 pKa = 9.87FSAPINDD100 pKa = 3.43SGAGVTVSGFGAFATRR116 pKa = 11.84SGSQSRR122 pKa = 11.84VLDD125 pKa = 3.81DD126 pKa = 3.68EE127 pKa = 4.53RR128 pKa = 11.84LLVIHH133 pKa = 7.06GPTLPVGTIGMYY145 pKa = 8.81TWDD148 pKa = 4.47LDD150 pKa = 4.44GIATGTGVGDD160 pKa = 3.96LGDD163 pKa = 4.28AEE165 pKa = 4.58STVTAGGGVAIPTANAATILGPVQDD190 pKa = 4.67VEE192 pKa = 4.39SSPDD196 pKa = 3.0GFTYY200 pKa = 10.62AGVIGDD206 pKa = 4.01YY207 pKa = 9.04QTFSLGALATTDD219 pKa = 2.93GAMFVGYY226 pKa = 10.7GEE228 pKa = 4.15LLGWEE233 pKa = 4.33VSTDD237 pKa = 3.0VTQNMVHH244 pKa = 6.46SGADD248 pKa = 3.3LTFSQTSSPDD258 pKa = 3.15GGNVAFTGYY267 pKa = 10.44AGPSFRR273 pKa = 11.84YY274 pKa = 9.93LSTEE278 pKa = 3.81TTTQTSVTPRR288 pKa = 11.84QFAEE292 pKa = 4.0YY293 pKa = 10.5APDD296 pKa = 3.42FEE298 pKa = 4.84YY299 pKa = 11.52AMFSLDD305 pKa = 3.75TIEE308 pKa = 5.63TIDD311 pKa = 3.25TYY313 pKa = 11.33YY314 pKa = 11.2AGGVVGGNIDD324 pKa = 3.21VSLWSGSTLSLGVGGGAYY342 pKa = 9.71YY343 pKa = 10.79ASSHH347 pKa = 5.52YY348 pKa = 10.88ASEE351 pKa = 4.53TEE353 pKa = 3.92ATLSGGSAAADD364 pKa = 2.97EE365 pKa = 5.28SVFSTLNLEE374 pKa = 4.45PEE376 pKa = 3.96TGFAYY381 pKa = 8.53TAKK384 pKa = 10.74ADD386 pKa = 4.01GKK388 pKa = 9.7FSAHH392 pKa = 5.83IGEE395 pKa = 4.2RR396 pKa = 11.84LQLNFGLGAEE406 pKa = 4.21YY407 pKa = 10.61LSRR410 pKa = 11.84VASARR415 pKa = 11.84FAGSNGMTVSDD426 pKa = 3.82TAGDD430 pKa = 3.91DD431 pKa = 3.62VGVPDD436 pKa = 5.77ADD438 pKa = 3.58FDD440 pKa = 4.56SSNATGSTILTFGDD454 pKa = 3.1AMSYY458 pKa = 10.35KK459 pKa = 9.88ATIGLTGQFF468 pKa = 3.77

Molecular weight: 47.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1K2I211|A0A1K2I211_9RHIZ Uncharacterized protein OS=Devosia enhydra OX=665118 GN=SAMN02983003_3602 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.74LVRR12 pKa = 11.84TRR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.65GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 9.04ILNLRR34 pKa = 11.84RR35 pKa = 11.84AVGRR39 pKa = 11.84KK40 pKa = 9.1KK41 pKa = 10.71LSAA44 pKa = 3.93

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3974

0

3974

1260071

24

2366

317.1

34.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.106 ± 0.052

0.701 ± 0.01

5.605 ± 0.029

5.587 ± 0.032

3.667 ± 0.026

8.875 ± 0.042

1.951 ± 0.019

5.314 ± 0.026

2.568 ± 0.031

10.489 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.504 ± 0.02

2.392 ± 0.025

5.469 ± 0.033

2.976 ± 0.021

7.267 ± 0.04

5.313 ± 0.028

5.31 ± 0.028

7.471 ± 0.033

1.3 ± 0.018

2.134 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski