Blackberry yellow vein-associated virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Crinivirus

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q5ICV3|Q5ICV3_9CLOS p5 OS=Blackberry yellow vein-associated virus OX=404196 PE=4 SV=1
MM1 pKa = 7.5LVQFFFTNDD10 pKa = 2.85IGVTIYY16 pKa = 11.0YY17 pKa = 10.69LSDD20 pKa = 3.1NKK22 pKa = 10.56NFEE25 pKa = 4.26GEE27 pKa = 4.16IFTVTSSDD35 pKa = 3.32QSLLLDD41 pKa = 4.02LLVVFPYY48 pKa = 10.55LRR50 pKa = 11.84EE51 pKa = 3.71RR52 pKa = 11.84WW53 pKa = 3.53

Molecular weight: 6.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q5ICV6|Q5ICV6_9CLOS p27 OS=Blackberry yellow vein-associated virus OX=404196 PE=4 SV=1
MM1 pKa = 7.26FWFFYY6 pKa = 11.06LLLLLVVFIFFPCQSKK22 pKa = 9.81SGYY25 pKa = 7.18VVRR28 pKa = 11.84SGRR31 pKa = 11.84FSTDD35 pKa = 2.26

Molecular weight: 4.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11

0

11

6806

35

2435

618.7

70.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.011 ± 0.253

2.366 ± 0.326

6.156 ± 0.387

5.613 ± 0.339

6.259 ± 0.506

4.584 ± 0.282

1.616 ± 0.225

6.582 ± 0.253

8.022 ± 0.522

9.051 ± 0.54

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.601 ± 0.165

5.951 ± 0.39

2.953 ± 0.128

2.542 ± 0.244

4.775 ± 0.132

9.286 ± 0.516

5.231 ± 0.322

7.611 ± 0.227

0.646 ± 0.052

4.143 ± 0.16
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski