Lactobacillus ghanensis DSM 18630

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Liquorilactobacillus; Liquorilactobacillus ghanensis

Average proteome isoelectric point is 7.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2384 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R1VY18|A0A0R1VY18_9LACO Acylphosphatase OS=Lactobacillus ghanensis DSM 18630 OX=1423750 GN=FC89_GL000158 PE=3 SV=1
MM1 pKa = 7.61TEE3 pKa = 4.42RR4 pKa = 11.84NDD6 pKa = 3.64NSSTALAQFANSAFFDD22 pKa = 3.44QSFPKK27 pKa = 10.34QSQDD31 pKa = 2.85YY32 pKa = 11.11DD33 pKa = 3.98EE34 pKa = 4.78ISNYY38 pKa = 10.59LEE40 pKa = 4.79LNAGYY45 pKa = 9.42LPSMTIFDD53 pKa = 4.24QAWQQYY59 pKa = 7.48LEE61 pKa = 4.22KK62 pKa = 10.33MEE64 pKa = 4.18

Molecular weight: 7.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R1VI38|A0A0R1VI38_9LACO Lipoprotein OS=Lactobacillus ghanensis DSM 18630 OX=1423750 GN=FC89_GL001775 PE=4 SV=1
MM1 pKa = 7.57KK2 pKa = 9.74TRR4 pKa = 11.84QVQVLRR10 pKa = 11.84IQQVRR15 pKa = 11.84LLLIKK20 pKa = 9.67EE21 pKa = 4.44LKK23 pKa = 10.28AVQKK27 pKa = 10.06QAAVRR32 pKa = 11.84IRR34 pKa = 11.84QVQVLQIQQVHH45 pKa = 6.45LLLIKK50 pKa = 9.75EE51 pKa = 4.52LKK53 pKa = 9.26TVQQQATARR62 pKa = 11.84IRR64 pKa = 11.84QVQVLRR70 pKa = 11.84IQQVHH75 pKa = 6.57LLLIKK80 pKa = 9.78EE81 pKa = 4.45LKK83 pKa = 9.19TVQKK87 pKa = 10.23QAAARR92 pKa = 11.84IRR94 pKa = 11.84QVQVLQIQKK103 pKa = 8.67TALRR107 pKa = 11.84LIKK110 pKa = 9.9KK111 pKa = 9.66LKK113 pKa = 10.11AIRR116 pKa = 11.84RR117 pKa = 11.84LQSSVQVMTQVLPQLLVRR135 pKa = 11.84AVQQRR140 pKa = 11.84RR141 pKa = 11.84PKK143 pKa = 10.27RR144 pKa = 11.84HH145 pKa = 6.52SLLQNQWQKK154 pKa = 10.8RR155 pKa = 11.84PRR157 pKa = 11.84VLHH160 pKa = 5.88HH161 pKa = 5.8QHH163 pKa = 6.2HH164 pKa = 6.04QLSKK168 pKa = 9.14QQLIKK173 pKa = 10.83LVLLKK178 pKa = 10.41LVPKK182 pKa = 10.56LVFLPAQAVRR192 pKa = 11.84QRR194 pKa = 11.84LFFIPRR200 pKa = 11.84KK201 pKa = 9.7RR202 pKa = 11.84PLLSWQRR209 pKa = 3.4

Molecular weight: 24.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2384

0

2384

747846

45

2068

313.7

35.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.265 ± 0.065

0.645 ± 0.016

4.883 ± 0.044

5.105 ± 0.047

4.465 ± 0.04

6.45 ± 0.049

2.001 ± 0.025

7.401 ± 0.053

7.035 ± 0.054

10.617 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.326 ± 0.024

4.879 ± 0.044

3.532 ± 0.026

5.51 ± 0.062

3.824 ± 0.036

5.989 ± 0.05

5.859 ± 0.042

6.619 ± 0.045

1.051 ± 0.019

3.52 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski