Williamwhitmania taraxaci

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Williamwhitmaniaceae; Williamwhitmania

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3616 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G6LB51|A0A1G6LB51_9BACT Chromosome partitioning protein ParB family OS=Williamwhitmania taraxaci OX=1640674 GN=SAMN05216323_103016 PE=3 SV=1
GG1 pKa = 6.63VTTTDD6 pKa = 3.98ILPSGYY12 pKa = 9.17TYY14 pKa = 11.26VSNDD18 pKa = 2.94LGASYY23 pKa = 11.37VPVTGIWTIGNLANGATASLNITATVLATGSYY55 pKa = 10.99ANTATVTSTTMDD67 pKa = 3.63PTPGNNTDD75 pKa = 3.36INTPVPNHH83 pKa = 6.23IPIAFDD89 pKa = 3.88DD90 pKa = 4.09SQTTFIEE97 pKa = 4.65TPVTIPVLGNDD108 pKa = 3.56TGLEE112 pKa = 4.13DD113 pKa = 4.11GGLAVTITVNPTNGTFVVNGDD134 pKa = 3.32NTVTYY139 pKa = 9.14TPNAGFTGTDD149 pKa = 2.98TFIYY153 pKa = 8.97QVCDD157 pKa = 3.43ADD159 pKa = 4.5GDD161 pKa = 4.48CATATVTITVNPTAINHH178 pKa = 6.07LPVAVNDD185 pKa = 4.08TTSTKK190 pKa = 10.28QDD192 pKa = 3.4TPVTIPVLGNDD203 pKa = 3.95SGLEE207 pKa = 3.99DD208 pKa = 4.29GGLMVTITVNPTNGTFVVNGDD229 pKa = 3.32NTVTYY234 pKa = 9.14TPNAGFTGIDD244 pKa = 2.68IFTYY248 pKa = 8.2QVCDD252 pKa = 3.72ANGDD256 pKa = 3.96CTTATVTITVIGTVIVPEE274 pKa = 4.43GFSPNGDD281 pKa = 2.91GVNDD285 pKa = 3.55NFVIPGLDD293 pKa = 3.36NFDD296 pKa = 4.01KK297 pKa = 11.19LSVEE301 pKa = 4.19IFNRR305 pKa = 11.84WGNVVYY311 pKa = 10.71KK312 pKa = 10.4EE313 pKa = 3.96EE314 pKa = 4.39HH315 pKa = 6.63YY316 pKa = 11.46KK317 pKa = 10.81NDD319 pKa = 3.29WDD321 pKa = 3.82GKK323 pKa = 8.72ANVGFTIGSDD333 pKa = 3.88LPVGTYY339 pKa = 9.71FFLVTIHH346 pKa = 7.49DD347 pKa = 4.01NGKK350 pKa = 10.2KK351 pKa = 7.69ITGYY355 pKa = 11.05VYY357 pKa = 9.38ITRR360 pKa = 4.25

Molecular weight: 37.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G6RK33|A0A1G6RK33_9BACT Uncharacterized protein OS=Williamwhitmania taraxaci OX=1640674 GN=SAMN05216323_107513 PE=4 SV=1
MM1 pKa = 7.51LGAICTLKK9 pKa = 10.81CEE11 pKa = 4.07NVILYY16 pKa = 9.92SRR18 pKa = 11.84NSSRR22 pKa = 11.84TLPRR26 pKa = 11.84FSTNGIFLLFATVRR40 pKa = 11.84RR41 pKa = 11.84VDD43 pKa = 3.53GFIANSKK50 pKa = 10.06NKK52 pKa = 10.14

Molecular weight: 5.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3616

0

3616

1202311

25

3589

332.5

37.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.11 ± 0.044

0.911 ± 0.013

5.037 ± 0.03

6.073 ± 0.044

5.026 ± 0.035

6.785 ± 0.047

1.725 ± 0.018

7.673 ± 0.04

6.827 ± 0.045

9.552 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.45 ± 0.021

5.294 ± 0.041

3.648 ± 0.024

3.315 ± 0.021

4.124 ± 0.028

6.946 ± 0.033

5.825 ± 0.063

6.8 ± 0.036

1.026 ± 0.014

3.852 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski