Oceanobacillus oncorhynchi

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Oceanobacillus

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4386 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0A1MLP3|A0A0A1MLP3_9BACI Cystathionine gamma-synthase/O-acetylhomoserine (Thiol)-lyase OS=Oceanobacillus oncorhynchi OX=545501 GN=metI PE=3 SV=1
MM1 pKa = 7.18LKK3 pKa = 9.95KK4 pKa = 9.75WFFFIATLVFVSALYY19 pKa = 10.47ACSGGDD25 pKa = 4.17DD26 pKa = 3.8GDD28 pKa = 4.2SKK30 pKa = 11.1EE31 pKa = 4.22GEE33 pKa = 4.08AAGGDD38 pKa = 3.74NVNATGFPIVEE49 pKa = 4.49EE50 pKa = 4.05EE51 pKa = 4.42LEE53 pKa = 4.1LTIFANKK60 pKa = 8.56PAQNEE65 pKa = 4.15GNDD68 pKa = 3.57WNDD71 pKa = 2.75ILIWNTYY78 pKa = 10.16RR79 pKa = 11.84DD80 pKa = 3.75LTNINVNWNSVSPDD94 pKa = 3.09ALEE97 pKa = 4.15EE98 pKa = 3.98NRR100 pKa = 11.84NLALGSGDD108 pKa = 4.09LPDD111 pKa = 4.49AFFLAEE117 pKa = 4.79LSNTDD122 pKa = 3.68LLRR125 pKa = 11.84YY126 pKa = 9.34GSQGAFLPLNDD137 pKa = 5.84LIDD140 pKa = 4.31EE141 pKa = 4.35YY142 pKa = 11.74APNLKK147 pKa = 10.42ALMEE151 pKa = 4.59NDD153 pKa = 3.42PTIEE157 pKa = 4.04KK158 pKa = 10.55AITFPDD164 pKa = 3.68GNIYY168 pKa = 10.87SMPSLIEE175 pKa = 4.77DD176 pKa = 4.05DD177 pKa = 4.36FLSLRR182 pKa = 11.84LSARR186 pKa = 11.84PWVNEE191 pKa = 3.52DD192 pKa = 3.02WLNEE196 pKa = 3.75LDD198 pKa = 3.64MDD200 pKa = 4.28IPEE203 pKa = 4.45TTGDD207 pKa = 3.31FYY209 pKa = 11.51EE210 pKa = 4.13YY211 pKa = 10.74LKK213 pKa = 10.83AVKK216 pKa = 10.14EE217 pKa = 3.99LDD219 pKa = 3.43PVGNGDD225 pKa = 4.24TIPYY229 pKa = 9.4GGTDD233 pKa = 2.94IAEE236 pKa = 4.22LVQWLSGSFGVMNHH250 pKa = 6.26GASNTNLDD258 pKa = 4.69LDD260 pKa = 4.75PNDD263 pKa = 3.95DD264 pKa = 3.8SKK266 pKa = 11.74VRR268 pKa = 11.84YY269 pKa = 8.93YY270 pKa = 10.46ATADD274 pKa = 3.45EE275 pKa = 4.16YY276 pKa = 11.48RR277 pKa = 11.84EE278 pKa = 3.92MLEE281 pKa = 4.31YY282 pKa = 10.42IHH284 pKa = 6.45MLYY287 pKa = 10.67EE288 pKa = 4.35EE289 pKa = 4.44GLIDD293 pKa = 4.2QSIFTIEE300 pKa = 3.65WGQFLANASDD310 pKa = 3.62NLYY313 pKa = 11.17GSMIFYY319 pKa = 10.71DD320 pKa = 4.5PIEE323 pKa = 4.34LFGEE327 pKa = 4.68EE328 pKa = 4.82IGSQYY333 pKa = 11.39NSLAALEE340 pKa = 5.1GPDD343 pKa = 3.69GHH345 pKa = 6.63QSYY348 pKa = 11.15NKK350 pKa = 9.86LSSSVWTPDD359 pKa = 2.93NLVITSEE366 pKa = 4.25NPNPAATVRR375 pKa = 11.84WMDD378 pKa = 3.36HH379 pKa = 6.28FYY381 pKa = 11.23GDD383 pKa = 3.91EE384 pKa = 4.15GAEE387 pKa = 3.99LYY389 pKa = 11.42YY390 pKa = 10.25MGVEE394 pKa = 4.09GEE396 pKa = 4.28TFEE399 pKa = 5.76IEE401 pKa = 4.17DD402 pKa = 4.0GEE404 pKa = 4.55AVYY407 pKa = 10.79SDD409 pKa = 5.26HH410 pKa = 7.0ILNPEE415 pKa = 3.49GDD417 pKa = 3.72MTFEE421 pKa = 3.74QAIAQDD427 pKa = 4.27LTWLGSISGIIKK439 pKa = 10.05ADD441 pKa = 3.49YY442 pKa = 9.7FQGGEE447 pKa = 4.01TAPQSMEE454 pKa = 3.67AAEE457 pKa = 4.56KK458 pKa = 10.47IEE460 pKa = 3.91PQVIDD465 pKa = 3.93EE466 pKa = 4.07VWPRR470 pKa = 11.84FTFTEE475 pKa = 4.12EE476 pKa = 3.75EE477 pKa = 3.93NRR479 pKa = 11.84ILQSTGEE486 pKa = 4.68DD487 pKa = 2.72INKK490 pKa = 9.52YY491 pKa = 8.28VEE493 pKa = 3.8EE494 pKa = 4.26MRR496 pKa = 11.84DD497 pKa = 3.28KK498 pKa = 11.1FITGDD503 pKa = 3.6EE504 pKa = 4.73DD505 pKa = 4.33LDD507 pKa = 3.67NWDD510 pKa = 4.82SYY512 pKa = 11.15IQTIEE517 pKa = 3.82QMGMEE522 pKa = 4.66EE523 pKa = 4.08LQEE526 pKa = 4.38VYY528 pKa = 9.93QAAYY532 pKa = 10.44DD533 pKa = 4.14RR534 pKa = 11.84YY535 pKa = 10.37QSNN538 pKa = 3.03

Molecular weight: 60.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0A1M526|A0A0A1M526_9BACI HTH-type transcriptional regulator CynR OS=Oceanobacillus oncorhynchi OX=545501 GN=cynR_2 PE=3 SV=1
MM1 pKa = 7.44KK2 pKa = 9.6RR3 pKa = 11.84TFQPNNRR10 pKa = 11.84KK11 pKa = 9.23RR12 pKa = 11.84KK13 pKa = 8.12KK14 pKa = 8.46VHH16 pKa = 5.5GFRR19 pKa = 11.84TRR21 pKa = 11.84MSTKK25 pKa = 9.9NGRR28 pKa = 11.84HH29 pKa = 4.47ILARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.09GRR39 pKa = 11.84KK40 pKa = 8.7VLSAA44 pKa = 4.05

Molecular weight: 5.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4386

0

4386

1268742

29

2686

289.3

32.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.418 ± 0.038

0.647 ± 0.011

5.326 ± 0.033

7.952 ± 0.053

4.547 ± 0.033

6.835 ± 0.039

2.069 ± 0.022

8.107 ± 0.038

6.373 ± 0.042

9.561 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.88 ± 0.019

4.344 ± 0.027

3.516 ± 0.019

3.95 ± 0.03

3.821 ± 0.027

5.917 ± 0.026

5.382 ± 0.023

6.786 ± 0.031

1.026 ± 0.016

3.542 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski