Amino acid dipepetide frequency for Sclerotinia sclerotiorum dsRNA mycovirus-L

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
17.033AlaAla: 17.033 ± 0.124
0.0AlaCys: 0.0 ± 0.0
5.299AlaAsp: 5.299 ± 1.186
5.678AlaGlu: 5.678 ± 0.905
3.407AlaPhe: 3.407 ± 0.252
5.678AlaGly: 5.678 ± 0.231
2.65AlaHis: 2.65 ± 0.259
5.299AlaIle: 5.299 ± 0.518
6.056AlaLys: 6.056 ± 1.647
15.14AlaLeu: 15.14 ± 4.97
2.271AlaMet: 2.271 ± 0.547
3.785AlaAsn: 3.785 ± 0.604
8.706AlaPro: 8.706 ± 0.934
4.921AlaGln: 4.921 ± 1.466
9.084AlaArg: 9.084 ± 1.789
7.192AlaSer: 7.192 ± 0.919
4.542AlaThr: 4.542 ± 0.043
4.921AlaVal: 4.921 ± 0.238
2.271AlaTrp: 2.271 ± 1.115
6.056AlaTyr: 6.056 ± 0.511
0.0AlaXaa: 0.0 ± 0.0
Cys
0.379CysAla: 0.379 ± 0.28
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.379CysGly: 0.379 ± 0.28
0.0CysHis: 0.0 ± 0.0
0.757CysIle: 0.757 ± 0.007
0.0CysLys: 0.0 ± 0.0
0.379CysLeu: 0.379 ± 0.288
0.379CysMet: 0.379 ± 0.28
0.379CysAsn: 0.379 ± 0.288
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.379CysArg: 0.379 ± 0.28
0.379CysSer: 0.379 ± 0.28
0.0CysThr: 0.0 ± 0.0
0.757CysVal: 0.757 ± 0.561
0.0CysTrp: 0.0 ± 0.0
0.757CysTyr: 0.757 ± 0.575
0.0CysXaa: 0.0 ± 0.0
Asp
6.056AspAla: 6.056 ± 0.057
0.0AspCys: 0.0 ± 0.0
1.514AspAsp: 1.514 ± 0.014
2.271AspGlu: 2.271 ± 0.021
3.028AspPhe: 3.028 ± 0.54
1.514AspGly: 1.514 ± 0.582
1.136AspHis: 1.136 ± 0.841
2.271AspIle: 2.271 ± 0.021
1.514AspLys: 1.514 ± 0.582
6.056AspLeu: 6.056 ± 0.511
0.379AspMet: 0.379 ± 0.438
1.136AspAsn: 1.136 ± 0.273
1.514AspPro: 1.514 ± 0.554
0.757AspGln: 0.757 ± 0.575
3.407AspArg: 3.407 ± 0.884
3.407AspSer: 3.407 ± 0.82
1.893AspThr: 1.893 ± 0.302
2.271AspVal: 2.271 ± 0.589
0.0AspTrp: 0.0 ± 0.0
3.028AspTyr: 3.028 ± 0.596
0.0AspXaa: 0.0 ± 0.0
Glu
3.407GluAla: 3.407 ± 1.452
0.379GluCys: 0.379 ± 0.288
2.65GluAsp: 2.65 ± 0.309
1.514GluGlu: 1.514 ± 0.554
2.65GluPhe: 2.65 ± 0.309
1.893GluGly: 1.893 ± 0.266
1.514GluHis: 1.514 ± 0.014
0.757GluIle: 0.757 ± 0.561
2.65GluLys: 2.65 ± 0.827
6.435GluLeu: 6.435 ± 0.792
0.757GluMet: 0.757 ± 0.007
3.028GluAsn: 3.028 ± 1.164
3.028GluPro: 3.028 ± 0.596
2.65GluGln: 2.65 ± 0.259
1.893GluArg: 1.893 ± 0.302
3.028GluSer: 3.028 ± 0.54
3.028GluThr: 3.028 ± 0.028
3.028GluVal: 3.028 ± 0.028
0.0GluTrp: 0.0 ± 0.0
0.757GluTyr: 0.757 ± 0.007
0.0GluXaa: 0.0 ± 0.0
Phe
5.678PheAla: 5.678 ± 0.905
0.0PheCys: 0.0 ± 0.0
1.514PheAsp: 1.514 ± 0.582
3.028PheGlu: 3.028 ± 0.028
1.136PhePhe: 1.136 ± 0.841
2.65PheGly: 2.65 ± 0.259
0.379PheHis: 0.379 ± 0.288
1.136PheIle: 1.136 ± 0.273
0.757PheLys: 0.757 ± 0.575
4.164PheLeu: 4.164 ± 0.245
1.136PheMet: 1.136 ± 0.295
2.271PheAsn: 2.271 ± 0.547
3.785PhePro: 3.785 ± 0.604
0.757PheGln: 0.757 ± 0.007
0.757PheArg: 0.757 ± 0.575
4.164PheSer: 4.164 ± 0.891
2.271PheThr: 2.271 ± 0.547
1.893PheVal: 1.893 ± 0.302
0.379PheTrp: 0.379 ± 0.28
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
7.949GlyAla: 7.949 ± 1.346
0.757GlyCys: 0.757 ± 0.007
2.65GlyAsp: 2.65 ± 0.259
2.65GlyGlu: 2.65 ± 1.395
1.893GlyPhe: 1.893 ± 0.834
3.028GlyGly: 3.028 ± 1.108
1.514GlyHis: 1.514 ± 0.014
2.271GlyIle: 2.271 ± 0.021
3.028GlyLys: 3.028 ± 1.676
4.542GlyLeu: 4.542 ± 0.043
2.271GlyMet: 2.271 ± 0.547
1.893GlyAsn: 1.893 ± 0.266
1.136GlyPro: 1.136 ± 0.295
1.514GlyGln: 1.514 ± 0.014
2.65GlyArg: 2.65 ± 0.259
2.271GlySer: 2.271 ± 0.021
3.407GlyThr: 3.407 ± 0.884
4.164GlyVal: 4.164 ± 0.245
0.757GlyTrp: 0.757 ± 0.007
2.65GlyTyr: 2.65 ± 0.827
0.0GlyXaa: 0.0 ± 0.0
His
3.028HisAla: 3.028 ± 0.596
0.379HisCys: 0.379 ± 0.288
0.757HisAsp: 0.757 ± 0.007
0.379HisGlu: 0.379 ± 0.28
1.893HisPhe: 1.893 ± 0.302
1.514HisGly: 1.514 ± 0.014
0.379HisHis: 0.379 ± 0.28
1.893HisIle: 1.893 ± 0.834
1.136HisLys: 1.136 ± 0.841
3.407HisLeu: 3.407 ± 1.388
0.0HisMet: 0.0 ± 0.0
2.65HisAsn: 2.65 ± 0.259
1.136HisPro: 1.136 ± 0.273
0.379HisGln: 0.379 ± 0.288
0.757HisArg: 0.757 ± 0.007
1.514HisSer: 1.514 ± 0.014
1.514HisThr: 1.514 ± 0.554
2.271HisVal: 2.271 ± 1.157
0.0HisTrp: 0.0 ± 0.0
1.136HisTyr: 1.136 ± 0.273
0.0HisXaa: 0.0 ± 0.0
Ile
3.028IleAla: 3.028 ± 1.108
0.757IleCys: 0.757 ± 0.007
1.514IleAsp: 1.514 ± 0.582
1.514IleGlu: 1.514 ± 0.554
0.379IlePhe: 0.379 ± 0.288
1.893IleGly: 1.893 ± 0.266
1.514IleHis: 1.514 ± 0.582
1.136IleIle: 1.136 ± 0.295
1.893IleLys: 1.893 ± 0.834
6.056IleLeu: 6.056 ± 0.057
0.0IleMet: 0.0 ± 0.0
2.271IleAsn: 2.271 ± 0.589
2.271IlePro: 2.271 ± 0.021
1.514IleGln: 1.514 ± 0.014
1.514IleArg: 1.514 ± 0.554
4.542IleSer: 4.542 ± 0.611
1.893IleThr: 1.893 ± 0.266
4.164IleVal: 4.164 ± 0.245
0.0IleTrp: 0.0 ± 0.0
0.757IleTyr: 0.757 ± 0.561
0.0IleXaa: 0.0 ± 0.0
Lys
3.407LysAla: 3.407 ± 1.956
0.379LysCys: 0.379 ± 0.28
0.0LysAsp: 0.0 ± 0.0
1.514LysGlu: 1.514 ± 1.15
1.136LysPhe: 1.136 ± 0.273
0.379LysGly: 0.379 ± 0.28
1.136LysHis: 1.136 ± 0.295
1.893LysIle: 1.893 ± 0.266
1.514LysLys: 1.514 ± 0.554
5.678LysLeu: 5.678 ± 2.503
0.379LysMet: 0.379 ± 0.28
2.65LysAsn: 2.65 ± 0.309
1.514LysPro: 1.514 ± 0.014
3.028LysGln: 3.028 ± 0.54
3.028LysArg: 3.028 ± 0.028
1.136LysSer: 1.136 ± 0.841
4.542LysThr: 4.542 ± 1.094
1.893LysVal: 1.893 ± 0.834
0.757LysTrp: 0.757 ± 0.007
1.893LysTyr: 1.893 ± 0.302
0.0LysXaa: 0.0 ± 0.0
Leu
15.897LeuAla: 15.897 ± 3.259
0.379LeuCys: 0.379 ± 0.28
5.299LeuAsp: 5.299 ± 0.518
4.542LeuGlu: 4.542 ± 1.094
3.407LeuPhe: 3.407 ± 1.388
4.164LeuGly: 4.164 ± 0.323
2.271LeuHis: 2.271 ± 0.547
2.271LeuIle: 2.271 ± 0.021
3.028LeuLys: 3.028 ± 1.108
12.869LeuLeu: 12.869 ± 2.152
1.893LeuMet: 1.893 ± 0.834
4.921LeuAsn: 4.921 ± 1.466
7.57LeuPro: 7.57 ± 0.639
3.407LeuGln: 3.407 ± 1.388
9.084LeuArg: 9.084 ± 1.619
9.084LeuSer: 9.084 ± 2.357
8.327LeuThr: 8.327 ± 0.49
5.299LeuVal: 5.299 ± 0.518
1.514LeuTrp: 1.514 ± 0.582
3.407LeuTyr: 3.407 ± 0.252
0.0LeuXaa: 0.0 ± 0.0
Met
1.893MetAla: 1.893 ± 0.87
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
1.514MetGlu: 1.514 ± 0.554
0.757MetPhe: 0.757 ± 0.561
0.379MetGly: 0.379 ± 0.288
0.379MetHis: 0.379 ± 0.28
0.379MetIle: 0.379 ± 0.288
0.757MetLys: 0.757 ± 0.007
2.271MetLeu: 2.271 ± 1.683
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
0.379MetPro: 0.379 ± 0.28
0.757MetGln: 0.757 ± 0.007
2.65MetArg: 2.65 ± 1.395
2.271MetSer: 2.271 ± 0.547
0.379MetThr: 0.379 ± 0.288
1.136MetVal: 1.136 ± 0.273
0.757MetTrp: 0.757 ± 0.561
0.379MetTyr: 0.379 ± 0.288
0.0MetXaa: 0.0 ± 0.0
Asn
5.678AsnAla: 5.678 ± 0.905
0.379AsnCys: 0.379 ± 0.288
3.028AsnAsp: 3.028 ± 1.108
1.893AsnGlu: 1.893 ± 0.87
0.757AsnPhe: 0.757 ± 0.575
3.028AsnGly: 3.028 ± 0.028
1.514AsnHis: 1.514 ± 0.014
2.271AsnIle: 2.271 ± 0.021
2.65AsnLys: 2.65 ± 0.259
3.785AsnLeu: 3.785 ± 0.604
1.136AsnMet: 1.136 ± 0.195
2.271AsnAsn: 2.271 ± 1.157
2.65AsnPro: 2.65 ± 0.309
0.757AsnGln: 0.757 ± 0.561
3.785AsnArg: 3.785 ± 1.172
4.542AsnSer: 4.542 ± 0.611
4.164AsnThr: 4.164 ± 0.323
3.407AsnVal: 3.407 ± 0.316
0.757AsnTrp: 0.757 ± 0.575
3.028AsnTyr: 3.028 ± 0.54
0.0AsnXaa: 0.0 ± 0.0
Pro
10.977ProAla: 10.977 ± 1.523
0.0ProCys: 0.0 ± 0.0
1.893ProAsp: 1.893 ± 0.302
2.65ProGlu: 2.65 ± 0.309
2.271ProPhe: 2.271 ± 1.157
4.542ProGly: 4.542 ± 0.043
1.136ProHis: 1.136 ± 0.295
3.785ProIle: 3.785 ± 0.035
1.893ProLys: 1.893 ± 0.266
3.785ProLeu: 3.785 ± 1.172
0.757ProMet: 0.757 ± 0.561
3.028ProAsn: 3.028 ± 0.028
2.271ProPro: 2.271 ± 0.589
3.785ProGln: 3.785 ± 0.533
3.785ProArg: 3.785 ± 0.604
4.164ProSer: 4.164 ± 0.891
4.542ProThr: 4.542 ± 2.315
6.435ProVal: 6.435 ± 2.617
0.379ProTrp: 0.379 ± 0.288
1.514ProTyr: 1.514 ± 0.014
0.0ProXaa: 0.0 ± 0.0
Gln
6.813GlnAla: 6.813 ± 0.064
0.379GlnCys: 0.379 ± 0.28
1.514GlnAsp: 1.514 ± 0.582
1.514GlnGlu: 1.514 ± 1.122
1.514GlnPhe: 1.514 ± 0.582
1.136GlnGly: 1.136 ± 0.295
3.028GlnHis: 3.028 ± 0.54
2.271GlnIle: 2.271 ± 0.021
0.757GlnLys: 0.757 ± 0.007
3.785GlnLeu: 3.785 ± 1.74
0.0GlnMet: 0.0 ± 0.0
1.514GlnAsn: 1.514 ± 0.014
2.271GlnPro: 2.271 ± 0.589
1.893GlnGln: 1.893 ± 0.266
3.407GlnArg: 3.407 ± 0.884
1.136GlnSer: 1.136 ± 0.273
1.136GlnThr: 1.136 ± 0.295
3.028GlnVal: 3.028 ± 0.596
0.379GlnTrp: 0.379 ± 0.288
0.379GlnTyr: 0.379 ± 0.28
0.0GlnXaa: 0.0 ± 0.0
Arg
7.192ArgAla: 7.192 ± 1.353
0.0ArgCys: 0.0 ± 0.0
2.271ArgAsp: 2.271 ± 1.115
1.893ArgGlu: 1.893 ± 0.87
3.028ArgPhe: 3.028 ± 1.164
3.785ArgGly: 3.785 ± 1.101
2.271ArgHis: 2.271 ± 0.021
3.028ArgIle: 3.028 ± 0.54
1.893ArgLys: 1.893 ± 0.302
2.271ArgLeu: 2.271 ± 0.021
1.136ArgMet: 1.136 ± 0.273
3.028ArgAsn: 3.028 ± 0.596
2.65ArgPro: 2.65 ± 0.877
2.65ArgGln: 2.65 ± 1.445
4.164ArgArg: 4.164 ± 0.245
6.813ArgSer: 6.813 ± 1.2
4.164ArgThr: 4.164 ± 0.245
3.785ArgVal: 3.785 ± 0.035
1.514ArgTrp: 1.514 ± 1.15
2.271ArgTyr: 2.271 ± 0.021
0.0ArgXaa: 0.0 ± 0.0
Ser
6.813SerAla: 6.813 ± 0.632
0.379SerCys: 0.379 ± 0.28
3.407SerAsp: 3.407 ± 0.884
2.271SerGlu: 2.271 ± 0.589
3.785SerPhe: 3.785 ± 1.172
5.299SerGly: 5.299 ± 2.791
1.136SerHis: 1.136 ± 0.863
3.407SerIle: 3.407 ± 0.316
3.407SerLys: 3.407 ± 0.252
9.841SerLeu: 9.841 ± 1.796
1.893SerMet: 1.893 ± 0.266
3.785SerAsn: 3.785 ± 0.604
4.921SerPro: 4.921 ± 1.466
1.514SerGln: 1.514 ± 0.014
1.514SerArg: 1.514 ± 0.014
3.407SerSer: 3.407 ± 0.316
7.949SerThr: 7.949 ± 1.346
3.785SerVal: 3.785 ± 0.604
1.514SerTrp: 1.514 ± 0.582
5.299SerTyr: 5.299 ± 1.754
0.0SerXaa: 0.0 ± 0.0
Thr
6.056ThrAla: 6.056 ± 1.079
0.0ThrCys: 0.0 ± 0.0
1.893ThrAsp: 1.893 ± 0.266
2.271ThrGlu: 2.271 ± 0.021
2.271ThrPhe: 2.271 ± 0.547
4.921ThrGly: 4.921 ± 0.806
1.136ThrHis: 1.136 ± 0.841
1.893ThrIle: 1.893 ± 0.834
1.893ThrLys: 1.893 ± 0.302
6.813ThrLeu: 6.813 ± 0.064
1.136ThrMet: 1.136 ± 0.273
4.542ThrAsn: 4.542 ± 0.525
7.192ThrPro: 7.192 ± 3.192
4.164ThrGln: 4.164 ± 0.891
2.65ThrArg: 2.65 ± 0.309
3.785ThrSer: 3.785 ± 0.604
4.164ThrThr: 4.164 ± 0.245
3.407ThrVal: 3.407 ± 0.252
0.757ThrTrp: 0.757 ± 0.561
3.407ThrTyr: 3.407 ± 0.82
0.0ThrXaa: 0.0 ± 0.0
Val
4.921ValAla: 4.921 ± 0.898
0.757ValCys: 0.757 ± 0.561
5.299ValAsp: 5.299 ± 0.05
3.028ValGlu: 3.028 ± 2.301
2.271ValPhe: 2.271 ± 0.021
3.407ValGly: 3.407 ± 0.82
1.514ValHis: 1.514 ± 0.554
0.757ValIle: 0.757 ± 0.575
1.514ValLys: 1.514 ± 0.554
5.678ValLeu: 5.678 ± 0.231
1.136ValMet: 1.136 ± 0.273
6.056ValAsn: 6.056 ± 1.193
6.813ValPro: 6.813 ± 2.336
1.136ValGln: 1.136 ± 0.863
3.028ValArg: 3.028 ± 0.028
6.056ValSer: 6.056 ± 0.057
3.028ValThr: 3.028 ± 1.676
3.028ValVal: 3.028 ± 0.596
0.757ValTrp: 0.757 ± 0.575
1.893ValTyr: 1.893 ± 0.266
0.0ValXaa: 0.0 ± 0.0
Trp
1.136TrpAla: 1.136 ± 0.863
0.0TrpCys: 0.0 ± 0.0
0.379TrpAsp: 0.379 ± 0.28
1.136TrpGlu: 1.136 ± 0.863
0.379TrpPhe: 0.379 ± 0.288
0.379TrpGly: 0.379 ± 0.28
0.379TrpHis: 0.379 ± 0.28
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
1.136TrpLeu: 1.136 ± 0.273
0.0TrpMet: 0.0 ± 0.0
1.136TrpAsn: 1.136 ± 0.295
0.379TrpPro: 0.379 ± 0.288
0.757TrpGln: 0.757 ± 0.575
0.757TrpArg: 0.757 ± 0.007
2.271TrpSer: 2.271 ± 0.021
0.379TrpThr: 0.379 ± 0.288
1.136TrpVal: 1.136 ± 0.273
0.379TrpTrp: 0.379 ± 0.288
0.757TrpTyr: 0.757 ± 0.561
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.65TyrAla: 2.65 ± 0.827
0.0TyrCys: 0.0 ± 0.0
2.65TyrAsp: 2.65 ± 0.827
3.785TyrGlu: 3.785 ± 1.669
1.893TyrPhe: 1.893 ± 1.438
3.028TyrGly: 3.028 ± 0.54
1.136TyrHis: 1.136 ± 0.273
1.136TyrIle: 1.136 ± 0.863
1.514TyrLys: 1.514 ± 0.554
4.542TyrLeu: 4.542 ± 1.094
0.0TyrMet: 0.0 ± 0.0
1.136TyrAsn: 1.136 ± 0.841
3.407TyrPro: 3.407 ± 0.82
1.514TyrGln: 1.514 ± 0.582
1.514TyrArg: 1.514 ± 0.582
4.164TyrSer: 4.164 ± 1.459
3.028TyrThr: 3.028 ± 0.028
2.271TyrVal: 2.271 ± 1.157
0.0TyrTrp: 0.0 ± 0.0
1.136TyrTyr: 1.136 ± 0.863
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2643 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski