Arthrobacter sp. Edens01

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Arthrobacter; unclassified Arthrobacter

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3212 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0N8HX36|A0A0N8HX36_9MICC Uncharacterized protein OS=Arthrobacter sp. Edens01 OX=1732020 GN=AO716_16090 PE=3 SV=1
MM1 pKa = 6.85TRR3 pKa = 11.84ALIVVDD9 pKa = 3.88VQNDD13 pKa = 3.59FCEE16 pKa = 4.95GGSLAVPGGNDD27 pKa = 3.02TAAEE31 pKa = 3.81ISDD34 pKa = 4.26YY35 pKa = 11.21IEE37 pKa = 4.01TSRR40 pKa = 11.84DD41 pKa = 2.95RR42 pKa = 11.84YY43 pKa = 10.61AVVAATQDD51 pKa = 3.1WHH53 pKa = 7.42IEE55 pKa = 4.13PGSHH59 pKa = 7.5FSDD62 pKa = 3.25NPNFRR67 pKa = 11.84DD68 pKa = 3.44SWPVHH73 pKa = 5.95CVAGTHH79 pKa = 6.15GAALNPDD86 pKa = 4.32LDD88 pKa = 4.05TEE90 pKa = 4.82FIDD93 pKa = 4.35AYY95 pKa = 10.2FRR97 pKa = 11.84KK98 pKa = 9.54GQYY101 pKa = 8.2EE102 pKa = 3.74AAYY105 pKa = 10.48SGFEE109 pKa = 4.04GLLAPDD115 pKa = 3.74VEE117 pKa = 4.88VPLGDD122 pKa = 4.26PDD124 pKa = 5.11AEE126 pKa = 4.3PEE128 pKa = 4.02PDD130 pKa = 3.53EE131 pKa = 5.48DD132 pKa = 5.71AVSLDD137 pKa = 3.07DD138 pKa = 3.68WLRR141 pKa = 11.84DD142 pKa = 3.58NGVDD146 pKa = 3.34EE147 pKa = 4.33VVIVGLATDD156 pKa = 3.84YY157 pKa = 10.85CVKK160 pKa = 10.11ATALDD165 pKa = 3.86AVAAGYY171 pKa = 7.79ATYY174 pKa = 10.5VIPEE178 pKa = 4.64LCRR181 pKa = 11.84GLDD184 pKa = 3.53KK185 pKa = 11.37VDD187 pKa = 3.45VLAALDD193 pKa = 3.9EE194 pKa = 4.8LEE196 pKa = 4.48DD197 pKa = 4.47AGVEE201 pKa = 4.39LLDD204 pKa = 4.28LL205 pKa = 4.67

Molecular weight: 22.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0P7G887|A0A0P7G887_9MICC Uncharacterized protein OS=Arthrobacter sp. Edens01 OX=1732020 GN=AO716_08540 PE=4 SV=1
MM1 pKa = 7.28TGIAIACALASAVFLAFGAQRR22 pKa = 11.84QGSAVSADD30 pKa = 3.4TGGLSLNSAGLGRR43 pKa = 11.84LLRR46 pKa = 11.84NPRR49 pKa = 11.84WLFGLLLLGVGTGLNVAALAMAPLTVVQPIGSLALVITTIVNSRR93 pKa = 11.84DD94 pKa = 2.87QGLRR98 pKa = 11.84LNRR101 pKa = 11.84VTVVSIVACVLGSMLFVLLAVGATRR126 pKa = 11.84SEE128 pKa = 4.27PVVEE132 pKa = 4.05ARR134 pKa = 11.84QEE136 pKa = 3.92IVIVLILAVVVAFFGMLNLVFGKK159 pKa = 10.41RR160 pKa = 11.84LGAIAHH166 pKa = 6.48ILGAGILFGFVAVLTKK182 pKa = 10.19TIAADD187 pKa = 3.66LLDD190 pKa = 4.26PNGRR194 pKa = 11.84FLLNVPWYY202 pKa = 8.66TIVGIAVAGGLGAWFVQSAYY222 pKa = 11.06SSGPPDD228 pKa = 3.76LVIAGLTVIDD238 pKa = 4.44PMVGIAIGIGVLNEE252 pKa = 4.06LRR254 pKa = 11.84PDD256 pKa = 3.39VPAVLGVAMGVCAVIAIVGVVALSRR281 pKa = 11.84YY282 pKa = 9.23HH283 pKa = 6.81PDD285 pKa = 3.24VIKK288 pKa = 10.58RR289 pKa = 11.84RR290 pKa = 11.84AMNKK294 pKa = 8.92RR295 pKa = 11.84RR296 pKa = 11.84QKK298 pKa = 10.21PVSTRR303 pKa = 11.84ATPTNKK309 pKa = 9.81PP310 pKa = 3.25

Molecular weight: 32.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3212

0

3212

1044346

37

2033

325.1

34.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.16 ± 0.073

0.58 ± 0.009

5.601 ± 0.037

6.042 ± 0.041

3.195 ± 0.03

9.119 ± 0.039

1.874 ± 0.02

4.22 ± 0.033

2.466 ± 0.032

10.483 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.035 ± 0.017

2.399 ± 0.025

5.518 ± 0.033

3.114 ± 0.023

6.704 ± 0.038

5.963 ± 0.031

5.702 ± 0.031

8.267 ± 0.034

1.426 ± 0.02

2.134 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski