Agrococcus pavilionensis RW1

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Agrococcus; Agrococcus pavilionensis

Average proteome isoelectric point is 6.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2776 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U1LP10|U1LP10_9MICO YCII domain-containing protein OS=Agrococcus pavilionensis RW1 OX=1330458 GN=L332_06755 PE=3 SV=1
MM1 pKa = 7.75KK2 pKa = 9.14FTKK5 pKa = 10.26LGRR8 pKa = 11.84AAVVAAAGALLLSSCAANEE27 pKa = 4.17SGADD31 pKa = 3.32EE32 pKa = 4.48AAPEE36 pKa = 4.57GSQAAGSSLSGDD48 pKa = 3.54LAGAGASSMGAAQEE62 pKa = 3.7AWIAGFQTEE71 pKa = 4.28NPDD74 pKa = 3.33VNVTYY79 pKa = 10.73DD80 pKa = 3.62PAGSGAGRR88 pKa = 11.84EE89 pKa = 3.91QFIAGGVSFAGSDD102 pKa = 3.23AYY104 pKa = 11.28LKK106 pKa = 10.88DD107 pKa = 3.7EE108 pKa = 4.21EE109 pKa = 4.97LEE111 pKa = 4.42GEE113 pKa = 4.62FGACVPDD120 pKa = 4.09TLPVDD125 pKa = 4.04LPVYY129 pKa = 10.01ISPIAVIFNVEE140 pKa = 4.33GVDD143 pKa = 4.07SLNMDD148 pKa = 3.97ASTIAKK154 pKa = 9.4IFSGQITSWDD164 pKa = 3.56DD165 pKa = 3.13PAIAEE170 pKa = 4.13QNEE173 pKa = 4.59GVEE176 pKa = 4.76LPATPIQPVHH186 pKa = 6.82RR187 pKa = 11.84SDD189 pKa = 5.61DD190 pKa = 3.57SGTTEE195 pKa = 4.6NFTEE199 pKa = 4.28YY200 pKa = 10.76LAATAAADD208 pKa = 3.25WTEE211 pKa = 4.32GVFEE215 pKa = 4.24TWPSSVYY222 pKa = 9.39STSEE226 pKa = 3.97GAQGTSGVVDD236 pKa = 3.88AVSNGTGTIGYY247 pKa = 9.82ADD249 pKa = 4.09ASRR252 pKa = 11.84AGDD255 pKa = 3.84LGTVALKK262 pKa = 10.81VGEE265 pKa = 4.28EE266 pKa = 4.18YY267 pKa = 11.43VPFTADD273 pKa = 2.88AAAAAVDD280 pKa = 3.58ASPRR284 pKa = 11.84VEE286 pKa = 4.08GRR288 pKa = 11.84HH289 pKa = 5.63EE290 pKa = 4.02GDD292 pKa = 2.97IAVEE296 pKa = 4.21LDD298 pKa = 3.18RR299 pKa = 11.84TTTEE303 pKa = 3.66AGVYY307 pKa = 8.98PLVLISYY314 pKa = 9.68AIACSEE320 pKa = 4.16YY321 pKa = 9.93QDD323 pKa = 4.6AEE325 pKa = 3.96AGEE328 pKa = 4.31LVKK331 pKa = 10.75AYY333 pKa = 10.34LSYY336 pKa = 10.75VASEE340 pKa = 4.28EE341 pKa = 4.17GQAAGQEE348 pKa = 4.36NAGNAPISDD357 pKa = 3.97EE358 pKa = 4.24LRR360 pKa = 11.84DD361 pKa = 3.9EE362 pKa = 4.14ILAVVDD368 pKa = 4.98SIQQ371 pKa = 3.27

Molecular weight: 37.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U1MNN2|U1MNN2_9MICO Uncharacterized protein OS=Agrococcus pavilionensis RW1 OX=1330458 GN=L332_03425 PE=4 SV=1
MM1 pKa = 7.56NILSRR6 pKa = 11.84LRR8 pKa = 11.84SAVSGRR14 pKa = 11.84RR15 pKa = 11.84TGGAARR21 pKa = 11.84GRR23 pKa = 11.84RR24 pKa = 11.84STGMGGAAGARR35 pKa = 11.84GRR37 pKa = 11.84GSLLSSALGWISGRR51 pKa = 11.84NRR53 pKa = 11.84RR54 pKa = 11.84RR55 pKa = 3.11

Molecular weight: 5.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2776

0

2776

872884

29

2082

314.4

33.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.464 ± 0.067

0.475 ± 0.011

6.118 ± 0.044

6.472 ± 0.045

2.81 ± 0.03

9.062 ± 0.044

2.094 ± 0.023

4.343 ± 0.034

1.688 ± 0.026

10.343 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.9 ± 0.019

1.5 ± 0.023

5.43 ± 0.036

2.843 ± 0.025

8.008 ± 0.061

5.193 ± 0.031

5.286 ± 0.039

8.826 ± 0.044

1.506 ± 0.022

1.639 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski