Cervus papillomavirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Epsilonpapillomavirus; Epsilonpapillomavirus 2

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A182BAF1|A0A182BAF1_9PAPI Minor capsid protein L2 OS=Cervus papillomavirus 2 OX=1434070 GN=L2 PE=3 SV=1
MM1 pKa = 7.49AVRR4 pKa = 11.84VRR6 pKa = 11.84SGRR9 pKa = 11.84VKK11 pKa = 10.4RR12 pKa = 11.84ASPYY16 pKa = 10.89DD17 pKa = 3.77LYY19 pKa = 10.25RR20 pKa = 11.84TCATGDD26 pKa = 3.91CPPDD30 pKa = 3.64VIPKK34 pKa = 9.95VEE36 pKa = 4.17GNTLADD42 pKa = 5.57KK43 pKa = 10.3ILKK46 pKa = 8.85WGSLGVYY53 pKa = 10.42FGGLGIGTGQARR65 pKa = 11.84PGLGTYY71 pKa = 8.92TPLGRR76 pKa = 11.84GGGGVTPRR84 pKa = 11.84PGTRR88 pKa = 11.84PLGTPFGGRR97 pKa = 11.84PIDD100 pKa = 3.96TIGSGIGRR108 pKa = 11.84PGIGRR113 pKa = 11.84PGTIDD118 pKa = 3.49TPVDD122 pKa = 4.0SILPEE127 pKa = 4.21SPAVVTPDD135 pKa = 4.81SMPTDD140 pKa = 4.02PGIGGMDD147 pKa = 3.18VDD149 pKa = 4.13VEE151 pKa = 4.33LVEE154 pKa = 4.43EE155 pKa = 4.17PSIRR159 pKa = 11.84LIEE162 pKa = 3.93PHH164 pKa = 6.97APDD167 pKa = 4.36DD168 pKa = 4.0VAVLDD173 pKa = 4.07VRR175 pKa = 11.84PTEE178 pKa = 4.19HH179 pKa = 7.2DD180 pKa = 3.52LSVRR184 pKa = 11.84TTNSSTVHH192 pKa = 6.34HH193 pKa = 6.57NPSFQGGSTLYY204 pKa = 10.71SEE206 pKa = 4.81VGEE209 pKa = 4.28TSGVEE214 pKa = 3.85NVLIAGSNIGGEE226 pKa = 3.73AHH228 pKa = 7.0EE229 pKa = 4.87NIEE232 pKa = 4.25LQWYY236 pKa = 5.88TEE238 pKa = 4.31PRR240 pKa = 11.84SSTPADD246 pKa = 3.57TPVGRR251 pKa = 11.84VRR253 pKa = 11.84GRR255 pKa = 11.84ANWFSRR261 pKa = 11.84RR262 pKa = 11.84YY263 pKa = 8.06YY264 pKa = 10.44DD265 pKa = 3.7QYY267 pKa = 9.36TAEE270 pKa = 5.55DD271 pKa = 3.71IGLLTDD277 pKa = 3.61PRR279 pKa = 11.84DD280 pKa = 3.43YY281 pKa = 10.62FYY283 pKa = 11.07EE284 pKa = 4.03VEE286 pKa = 4.25NPAFEE291 pKa = 5.16GDD293 pKa = 3.84SFDD296 pKa = 3.62VAGPAVSAEE305 pKa = 3.97PLQVEE310 pKa = 4.67LRR312 pKa = 11.84DD313 pKa = 3.68ITHH316 pKa = 6.11VSAARR321 pKa = 11.84ALSGPSGRR329 pKa = 11.84IGLGRR334 pKa = 11.84IGFRR338 pKa = 11.84STLQTRR344 pKa = 11.84SGVSIGQPLHH354 pKa = 5.65FRR356 pKa = 11.84YY357 pKa = 10.31SFSTIAGEE365 pKa = 4.22TSLEE369 pKa = 3.98LLPHH373 pKa = 6.52SFSQEE378 pKa = 3.8PVDD381 pKa = 3.48VGFYY385 pKa = 7.7EE386 pKa = 4.46TAAGDD391 pKa = 3.75SDD393 pKa = 4.4FVLVDD398 pKa = 4.29LDD400 pKa = 3.98STEE403 pKa = 4.86SIYY406 pKa = 11.14SDD408 pKa = 2.99SHH410 pKa = 8.68LIDD413 pKa = 4.5SDD415 pKa = 3.74TDD417 pKa = 3.74SLHH420 pKa = 6.92GILVLYY426 pKa = 10.0EE427 pKa = 3.98NEE429 pKa = 5.02AIDD432 pKa = 4.01TVPVEE437 pKa = 4.65TVDD440 pKa = 3.99QFPPDD445 pKa = 4.68LIQRR449 pKa = 11.84PVTVPDD455 pKa = 3.18TGLWPSSKK463 pKa = 10.71GEE465 pKa = 3.93PPAVIAEE472 pKa = 4.07DD473 pKa = 5.19DD474 pKa = 3.62IPGIIILTDD483 pKa = 3.08SDD485 pKa = 5.7AGFFWNTFLHH495 pKa = 6.83PSLLSKK501 pKa = 10.85KK502 pKa = 9.86KK503 pKa = 10.4GKK505 pKa = 8.39KK506 pKa = 7.62TFF508 pKa = 3.52

Molecular weight: 54.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A182BAF0|A0A182BAF0_9PAPI Regulatory protein E2 OS=Cervus papillomavirus 2 OX=1434070 GN=E2 PE=3 SV=1
MM1 pKa = 6.99VAGPACLTTLPKK13 pKa = 10.04INKK16 pKa = 8.28PDD18 pKa = 3.53GVEE21 pKa = 4.13LILRR25 pKa = 11.84KK26 pKa = 9.94LPLRR30 pKa = 11.84PPPPKK35 pKa = 9.68PARR38 pKa = 11.84CMLSSSSGIYY48 pKa = 10.44GVFISCICSTTVRR61 pKa = 11.84ICVEE65 pKa = 4.06SGRR68 pKa = 11.84KK69 pKa = 9.27SILSFQDD76 pKa = 3.99LLTNDD81 pKa = 3.99LTFLCPNCARR91 pKa = 11.84KK92 pKa = 10.08NGFF95 pKa = 3.38

Molecular weight: 10.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2255

95

600

375.8

41.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.253 ± 0.466

2.306 ± 0.928

6.297 ± 0.441

5.765 ± 0.451

4.479 ± 0.462

7.761 ± 0.992

1.818 ± 0.167

4.568 ± 0.594

4.834 ± 0.853

8.47 ± 0.493

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.596 ± 0.257

4.479 ± 0.849

6.829 ± 1.021

3.326 ± 0.601

5.942 ± 0.529

8.16 ± 0.596

6.12 ± 0.732

6.563 ± 0.541

1.463 ± 0.306

2.971 ± 0.251
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski