Mint virus X

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 7.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q5G7H3|Q5G7H3_9VIRU ORF1 protein OS=Mint virus X OX=301865 PE=4 SV=1
MM1 pKa = 7.95DD2 pKa = 4.7SYY4 pKa = 11.1RR5 pKa = 11.84AEE7 pKa = 3.97LASAFTRR14 pKa = 11.84TSLPLSKK21 pKa = 10.08PIVVHH26 pKa = 5.75TVAGAGKK33 pKa = 6.94TTFIRR38 pKa = 11.84RR39 pKa = 11.84LIRR42 pKa = 11.84HH43 pKa = 6.19APFPTAITGGTPDD56 pKa = 4.29PPHH59 pKa = 7.31ISGQRR64 pKa = 11.84ITAPPGPANIVDD76 pKa = 4.82EE77 pKa = 4.62YY78 pKa = 11.01PLVDD82 pKa = 3.17WAGADD87 pKa = 3.93VIFADD92 pKa = 4.37PLQHH96 pKa = 7.37RR97 pKa = 11.84GPTLPAHH104 pKa = 5.12YY105 pKa = 8.91TSSITHH111 pKa = 6.35RR112 pKa = 11.84FGRR115 pKa = 11.84ATCEE119 pKa = 3.88LLSKK123 pKa = 10.7FGITAEE129 pKa = 4.21SNKK132 pKa = 9.72EE133 pKa = 3.82DD134 pKa = 3.35EE135 pKa = 5.39VFFGWAFADD144 pKa = 3.97DD145 pKa = 4.09PEE147 pKa = 5.07GAVICLDD154 pKa = 4.39AEE156 pKa = 4.33AQSLASWNGLEE167 pKa = 4.41HH168 pKa = 7.19LKK170 pKa = 10.58PCEE173 pKa = 3.76ALGATFPVVTVISGTPLEE191 pKa = 4.5EE192 pKa = 4.94ADD194 pKa = 4.07AVDD197 pKa = 4.95RR198 pKa = 11.84YY199 pKa = 10.3IALTRR204 pKa = 11.84HH205 pKa = 4.8TRR207 pKa = 11.84LLRR210 pKa = 11.84ILLL213 pKa = 4.1

Molecular weight: 23.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q5G7H2|Q5G7H2_9VIRU TGB 1 OS=Mint virus X OX=301865 PE=4 SV=1
MM1 pKa = 7.71PLAPPPDD8 pKa = 3.66YY9 pKa = 11.12SKK11 pKa = 11.5AVLAVAVGLAAALLVHH27 pKa = 6.09QLTRR31 pKa = 11.84STLPHH36 pKa = 6.48SGDD39 pKa = 4.36NIHH42 pKa = 6.58SLPFGGSYY50 pKa = 11.07VDD52 pKa = 3.39GTKK55 pKa = 10.12RR56 pKa = 11.84IHH58 pKa = 6.63FGGPSRR64 pKa = 11.84GSSGHH69 pKa = 6.26LWLPALIVAILPGIIWLGRR88 pKa = 11.84PRR90 pKa = 11.84AAHH93 pKa = 5.53VCRR96 pKa = 11.84CPLCAAARR104 pKa = 11.84PPP106 pKa = 3.45

Molecular weight: 11.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1954

95

1312

390.8

43.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.798 ± 2.794

1.791 ± 0.378

5.578 ± 0.842

4.964 ± 1.213

5.015 ± 0.529

5.629 ± 1.427

3.992 ± 0.413

4.759 ± 0.562

4.094 ± 1.031

10.287 ± 0.732

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.586 ± 0.441

2.508 ± 0.631

7.216 ± 0.99

3.531 ± 1.114

5.681 ± 0.217

6.397 ± 0.559

7.062 ± 0.754

5.322 ± 0.328

1.331 ± 0.095

2.456 ± 0.488
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski