Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus peraridilitoris

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4164 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L0A8N8|L0A8N8_DEIPD ABC-type dipeptide/oligopeptide/nickel transport system permease component OS=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) OX=937777 GN=Deipe_4053 PE=3 SV=1
MM1 pKa = 7.12PQYY4 pKa = 10.91LIVLEE9 pKa = 4.58PGANNWSAYY18 pKa = 10.46APDD21 pKa = 3.9LPGVVTTGKK30 pKa = 10.35DD31 pKa = 3.25ADD33 pKa = 4.0DD34 pKa = 3.44TTEE37 pKa = 3.89RR38 pKa = 11.84MRR40 pKa = 11.84EE41 pKa = 3.85AIAAHH46 pKa = 7.05LYY48 pKa = 9.77EE49 pKa = 4.53LQQDD53 pKa = 3.53GDD55 pKa = 4.59EE56 pKa = 4.61IPVPTSTPEE65 pKa = 3.86THH67 pKa = 6.87VSADD71 pKa = 3.78LGNVLCMIEE80 pKa = 3.98PAPP83 pKa = 4.15

Molecular weight: 8.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L0A9H2|L0A9H2_DEIPD Uncharacterized protein OS=Deinococcus peraridilitoris (strain DSM 19664 / LMG 22246 / CIP 109416 / KR-200) OX=937777 GN=Deipe_4355 PE=4 SV=1
MM1 pKa = 7.64ILPAEE6 pKa = 4.14KK7 pKa = 10.44AGISVRR13 pKa = 11.84RR14 pKa = 11.84QCQLLKK20 pKa = 10.44VNRR23 pKa = 11.84ASVHH27 pKa = 4.25YY28 pKa = 10.29QKK30 pKa = 9.6TLKK33 pKa = 10.39RR34 pKa = 11.84EE35 pKa = 3.91RR36 pKa = 11.84TQGINDD42 pKa = 3.49DD43 pKa = 3.75QLRR46 pKa = 11.84QEE48 pKa = 4.26IEE50 pKa = 4.17QVILDD55 pKa = 3.89CSGYY59 pKa = 8.79GYY61 pKa = 10.71RR62 pKa = 11.84RR63 pKa = 11.84VTHH66 pKa = 5.57EE67 pKa = 3.55LGRR70 pKa = 11.84RR71 pKa = 11.84HH72 pKa = 5.75RR73 pKa = 11.84QVNHH77 pKa = 3.87MRR79 pKa = 11.84VRR81 pKa = 11.84RR82 pKa = 11.84VMKK85 pKa = 9.57QHH87 pKa = 5.88QLQCRR92 pKa = 11.84VRR94 pKa = 11.84PRR96 pKa = 11.84KK97 pKa = 10.01KK98 pKa = 9.29NTPGLPAAGIPNLLRR113 pKa = 11.84DD114 pKa = 4.01EE115 pKa = 5.18KK116 pKa = 10.38IVPSGPDD123 pKa = 3.13QVWIEE128 pKa = 4.01ARR130 pKa = 11.84PGRR133 pKa = 11.84PCPGEE138 pKa = 3.74PLACGLHH145 pKa = 6.05LRR147 pKa = 11.84ARR149 pKa = 11.84PDD151 pKa = 3.22GFRR154 pKa = 11.84VPGLRR159 pKa = 11.84TRR161 pKa = 11.84RR162 pKa = 11.84VFKK165 pKa = 10.27EE166 pKa = 3.39DD167 pKa = 3.02RR168 pKa = 11.84GLGFVVTSGRR178 pKa = 11.84AAGVCCIEE186 pKa = 5.69DD187 pKa = 3.65GNQRR191 pKa = 11.84AGSVAGLIHH200 pKa = 6.98HH201 pKa = 6.98SDD203 pKa = 3.16QGSVYY208 pKa = 10.47QSGAYY213 pKa = 9.43LALLDD218 pKa = 4.02

Molecular weight: 24.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4164

0

4164

1261125

29

3232

302.9

33.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.4 ± 0.048

0.652 ± 0.011

4.941 ± 0.028

6.021 ± 0.039

3.433 ± 0.022

8.547 ± 0.038

2.339 ± 0.024

3.739 ± 0.029

2.637 ± 0.031

11.622 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.892 ± 0.016

2.669 ± 0.026

5.302 ± 0.034

4.002 ± 0.028

7.635 ± 0.038

5.623 ± 0.033

5.739 ± 0.038

7.949 ± 0.031

1.428 ± 0.016

2.429 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski