Rhesus monkey rhadinovirus H26-95

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus; Macacine gammaherpesvirus 5

Average proteome isoelectric point is 7.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 95 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q77NI9|Q77NI9_9GAMA ORF52 OS=Rhesus monkey rhadinovirus H26-95 OX=69256 GN=ORF52 PE=3 SV=1
MM1 pKa = 7.27TGSIVLALALLACLYY16 pKa = 10.8LCLPVCATVTTSSTTGTGTPPVTTNPSAAPSVTPSFYY53 pKa = 10.66DD54 pKa = 3.56YY55 pKa = 11.29DD56 pKa = 4.35CSADD60 pKa = 3.26TYY62 pKa = 11.31QPVLSSFSSIWAVINSVLVAVATFLYY88 pKa = 8.44LTYY91 pKa = 9.62MCFFKK96 pKa = 10.81FVEE99 pKa = 5.05TVAHH103 pKa = 5.99EE104 pKa = 4.0

Molecular weight: 11.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9J2H1|Q9J2H1_9GAMA Cyclin D homolog OS=Rhesus monkey rhadinovirus H26-95 OX=69256 GN=ORF72 PE=3 SV=1
MM1 pKa = 7.15WGSRR5 pKa = 11.84QHH7 pKa = 6.75RR8 pKa = 11.84SGIVSGHH15 pKa = 5.78GLRR18 pKa = 11.84SSCRR22 pKa = 11.84GHH24 pKa = 6.48CGRR27 pKa = 11.84RR28 pKa = 11.84GGTRR32 pKa = 11.84EE33 pKa = 3.5QAGRR37 pKa = 11.84RR38 pKa = 11.84GRR40 pKa = 11.84GRR42 pKa = 11.84LGRR45 pKa = 11.84ASLPAPTPPAPTTSGPQVRR64 pKa = 11.84AVAEE68 pKa = 4.08QGHH71 pKa = 6.07GSDD74 pKa = 4.09TEE76 pKa = 4.21TATEE80 pKa = 4.15SRR82 pKa = 11.84HH83 pKa = 5.67GSSQGSPSGSGSEE96 pKa = 4.18SVIVLGSPTPSPSGSAPVLASGLSPRR122 pKa = 11.84NTSGSSPASPASHH135 pKa = 6.74SPPPSPPSHH144 pKa = 7.34PGPHH148 pKa = 6.08SPAPPSSHH156 pKa = 6.3NPSPNQQPSSFLQPSPHH173 pKa = 7.33DD174 pKa = 3.77SPEE177 pKa = 4.13PPEE180 pKa = 4.97PPTSLPPPDD189 pKa = 4.45SPGPPQSPTPTSSPPPQSPPDD210 pKa = 3.79SPEE213 pKa = 4.23PPQSPTPQQAPSPNTQQAVSHH234 pKa = 6.71TDD236 pKa = 2.93HH237 pKa = 7.02PTGPSRR243 pKa = 11.84PGPPFPGHH251 pKa = 6.04TSHH254 pKa = 7.1SYY256 pKa = 9.39TVGGWGPPTRR266 pKa = 11.84AGGVPCLRR274 pKa = 11.84LRR276 pKa = 11.84CTSHH280 pKa = 6.87NSHH283 pKa = 6.7EE284 pKa = 4.5DD285 pKa = 3.42EE286 pKa = 4.63APEE289 pKa = 3.91RR290 pKa = 11.84QQEE293 pKa = 4.17QEE295 pKa = 3.97GEE297 pKa = 4.1EE298 pKa = 4.25RR299 pKa = 11.84QQQPARR305 pKa = 11.84PPRR308 pKa = 11.84PPRR311 pKa = 11.84PPRR314 pKa = 11.84YY315 pKa = 8.48PIPIPYY321 pKa = 9.16PSSEE325 pKa = 4.01EE326 pKa = 3.88EE327 pKa = 4.06VPRR330 pKa = 11.84KK331 pKa = 9.69YY332 pKa = 10.3RR333 pKa = 11.84PQRR336 pKa = 11.84RR337 pKa = 11.84FYY339 pKa = 10.68RR340 pKa = 11.84QVLGPRR346 pKa = 11.84IDD348 pKa = 3.73PPRR351 pKa = 11.84PGPWCHH357 pKa = 6.42GVIFCNSDD365 pKa = 3.2PYY367 pKa = 11.37SLYY370 pKa = 10.78RR371 pKa = 11.84LARR374 pKa = 11.84CLQFPGIRR382 pKa = 11.84ASSVRR387 pKa = 11.84VLPDD391 pKa = 3.26APGSPVIPAFCITVFCQSRR410 pKa = 11.84GTAKK414 pKa = 10.28AVKK417 pKa = 9.25KK418 pKa = 10.48ARR420 pKa = 11.84RR421 pKa = 11.84RR422 pKa = 11.84WEE424 pKa = 3.82RR425 pKa = 11.84HH426 pKa = 5.73HH427 pKa = 7.05PSAPHH432 pKa = 5.35FQASIVRR439 pKa = 11.84MDD441 pKa = 3.6RR442 pKa = 11.84GLPIQHH448 pKa = 6.95

Molecular weight: 47.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

95

0

95

37272

69

2548

392.3

43.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.722 ± 0.188

2.578 ± 0.167

4.668 ± 0.16

4.934 ± 0.173

4.373 ± 0.158

6.359 ± 0.362

2.715 ± 0.09

4.832 ± 0.18

4.014 ± 0.187

9.943 ± 0.239

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.066 ± 0.106

4.116 ± 0.16

6.45 ± 0.278

3.689 ± 0.164

6.08 ± 0.208

7.268 ± 0.182

6.581 ± 0.284

7.247 ± 0.219

1.256 ± 0.099

3.11 ± 0.136
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski