Komagataeibacter hansenii ATCC 23769

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter; Komagataeibacter hansenii

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3303 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D5QB18|D5QB18_KOMHA tRNA pseudouridine synthase B OS=Komagataeibacter hansenii ATCC 23769 OX=714995 GN=truB PE=3 SV=1
MM1 pKa = 7.4PQLSLHH7 pKa = 6.39SPTGPLTVSAEE18 pKa = 4.06DD19 pKa = 3.71DD20 pKa = 4.09TIVALDD26 pKa = 3.64WGWGRR31 pKa = 11.84DD32 pKa = 3.7QEE34 pKa = 4.43EE35 pKa = 4.52TPLLRR40 pKa = 11.84RR41 pKa = 11.84ACDD44 pKa = 3.0WLDD47 pKa = 3.17AYY49 pKa = 11.07FDD51 pKa = 4.63GDD53 pKa = 4.02TTPCTLPLSPYY64 pKa = 7.78GTPQQVAAWTFIRR77 pKa = 11.84TIPMGHH83 pKa = 6.45TLPCAEE89 pKa = 4.73VARR92 pKa = 11.84QASVTVADD100 pKa = 3.98VVAACSEE107 pKa = 4.1NPIPILIPCHH117 pKa = 5.4RR118 pKa = 11.84VNMEE122 pKa = 3.37GCADD126 pKa = 3.99YY127 pKa = 11.2DD128 pKa = 3.94ADD130 pKa = 4.41TYY132 pKa = 11.2PGDD135 pKa = 3.6RR136 pKa = 11.84GAMDD140 pKa = 3.67RR141 pKa = 11.84AFLRR145 pKa = 11.84DD146 pKa = 4.15LEE148 pKa = 4.36TDD150 pKa = 4.02APDD153 pKa = 4.03LDD155 pKa = 3.98

Molecular weight: 16.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D5QAY4|D5QAY4_KOMHA Uncharacterized protein OS=Komagataeibacter hansenii ATCC 23769 OX=714995 GN=GXY_01288 PE=4 SV=1
MM1 pKa = 7.31TVVQLLSPFMLALSVGVAAALHH23 pKa = 5.77LVRR26 pKa = 11.84ARR28 pKa = 11.84GLAPQAQPVRR38 pKa = 11.84VRR40 pKa = 11.84NRR42 pKa = 11.84RR43 pKa = 3.25

Molecular weight: 4.66 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3303

0

3303

1001832

21

3523

303.3

32.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.924 ± 0.058

1.111 ± 0.015

5.729 ± 0.036

4.714 ± 0.041

3.406 ± 0.028

8.675 ± 0.044

2.739 ± 0.024

5.106 ± 0.035

2.346 ± 0.028

9.85 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.032 ± 0.024

2.613 ± 0.034

5.663 ± 0.034

3.409 ± 0.026

7.496 ± 0.052

5.395 ± 0.035

5.762 ± 0.04

7.358 ± 0.044

1.416 ± 0.017

2.253 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski