Marinobacterium georgiense DSM 11526

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oceanospirillaceae; Marinobacterium; Marinobacterium georgiense

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3706 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H3ZVW7|A0A1H3ZVW7_9GAMM HD domain-containing protein OS=Marinobacterium georgiense DSM 11526 OX=1122198 GN=SAMN02745729_102175 PE=4 SV=1
MM1 pKa = 6.92YY2 pKa = 10.49QLDD5 pKa = 3.9LMTTEE10 pKa = 5.08GCHH13 pKa = 6.41LCDD16 pKa = 4.25DD17 pKa = 4.54AVAILQLGLEE27 pKa = 4.25PDD29 pKa = 3.56EE30 pKa = 6.06AEE32 pKa = 3.98VDD34 pKa = 4.0LVDD37 pKa = 4.22IVYY40 pKa = 10.72DD41 pKa = 3.61EE42 pKa = 4.88ALMEE46 pKa = 4.64RR47 pKa = 11.84YY48 pKa = 7.65ATRR51 pKa = 11.84IPVLVDD57 pKa = 3.09RR58 pKa = 11.84VGGGEE63 pKa = 4.33LNWPFDD69 pKa = 4.21GQRR72 pKa = 11.84LAQFLQNCAQPP83 pKa = 3.65

Molecular weight: 9.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H4GJV0|A0A1H4GJV0_9GAMM tRNA pseudouridine synthase B OS=Marinobacterium georgiense DSM 11526 OX=1122198 GN=truB PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.46RR12 pKa = 11.84KK13 pKa = 9.37RR14 pKa = 11.84NHH16 pKa = 5.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATANGRR28 pKa = 11.84QVLNRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.7GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3706

0

3706

1196020

28

2994

322.7

35.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.576 ± 0.043

1.051 ± 0.015

5.57 ± 0.039

6.467 ± 0.039

3.645 ± 0.023

7.48 ± 0.046

2.322 ± 0.02

5.427 ± 0.032

3.526 ± 0.035

11.452 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.567 ± 0.023

3.284 ± 0.027

4.498 ± 0.028

4.783 ± 0.038

6.278 ± 0.036

6.142 ± 0.034

5.067 ± 0.032

6.834 ± 0.036

1.37 ± 0.017

2.66 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski