Sparus aurata papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Secondpapillomavirinae; Alefpapillomavirus; Alefpapillomavirus 1

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B2RWA6|A0A1B2RWA6_9PAPI SORF3 OS=Sparus aurata papillomavirus 1 OX=1885928 PE=4 SV=1
MM1 pKa = 7.93RR2 pKa = 11.84FKK4 pKa = 10.84QDD6 pKa = 3.24LSVLVPSFDD15 pKa = 5.87DD16 pKa = 6.49DD17 pKa = 4.96DD18 pKa = 6.6DD19 pKa = 5.01DD20 pKa = 4.86WLLCDD25 pKa = 4.93EE26 pKa = 5.14EE27 pKa = 5.57FDD29 pKa = 5.47DD30 pKa = 6.23VLDD33 pKa = 3.51MWIEE37 pKa = 4.01EE38 pKa = 4.06EE39 pKa = 4.2FEE41 pKa = 3.98LVIEE45 pKa = 4.26IVHH48 pKa = 5.33YY49 pKa = 10.75VYY51 pKa = 10.62II52 pKa = 4.57

Molecular weight: 6.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B2RWA7|A0A1B2RWA7_9PAPI L2 OS=Sparus aurata papillomavirus 1 OX=1885928 PE=4 SV=1
MM1 pKa = 8.29LMDD4 pKa = 5.38SILWLTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 10.46YY14 pKa = 9.11ITTSSSLTMEE24 pKa = 4.23TFIMIVLPLHH34 pKa = 5.9PQSLPLKK41 pKa = 7.8RR42 pKa = 11.84AKK44 pKa = 9.82RR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84LRR52 pKa = 11.84KK53 pKa = 9.56LKK55 pKa = 10.5APKK58 pKa = 9.75RR59 pKa = 11.84AQKK62 pKa = 10.56LL63 pKa = 3.52

Molecular weight: 7.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

2

9

2538

52

565

282.0

32.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.846 ± 0.617

1.812 ± 0.32

5.319 ± 0.752

7.447 ± 0.469

3.94 ± 0.414

6.383 ± 0.574

2.6 ± 0.297

5.713 ± 0.376

7.329 ± 0.806

8.274 ± 1.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.97 ± 0.297

5.201 ± 0.677

5.162 ± 0.722

3.822 ± 0.39

5.201 ± 0.517

6.777 ± 0.299

6.501 ± 0.391

6.541 ± 0.954

1.655 ± 0.253

3.507 ± 0.446
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski