Trichechus manatus papillomavirus 4

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Rhopapillomavirus; Rhopapillomavirus 2

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F6TNL2|A0A0F6TNL2_9PAPI Regulatory protein E2 OS=Trichechus manatus papillomavirus 4 OX=1435497 GN=E2 PE=3 SV=1
MM1 pKa = 7.36HH2 pKa = 7.39GVTATLQDD10 pKa = 3.3IVLYY14 pKa = 9.36EE15 pKa = 4.17YY16 pKa = 10.11PEE18 pKa = 3.81PHH20 pKa = 6.8RR21 pKa = 11.84PVDD24 pKa = 3.51LHH26 pKa = 7.83CDD28 pKa = 3.47EE29 pKa = 4.8EE30 pKa = 4.69VAYY33 pKa = 10.98SDD35 pKa = 4.3LDD37 pKa = 3.71EE38 pKa = 5.01EE39 pKa = 4.61EE40 pKa = 4.63EE41 pKa = 4.57SVSVLQTPYY50 pKa = 10.56RR51 pKa = 11.84VLVEE55 pKa = 4.44CGFCRR60 pKa = 11.84RR61 pKa = 11.84PVRR64 pKa = 11.84IVVVSTGGGIHH75 pKa = 7.3RR76 pKa = 11.84LHH78 pKa = 6.56QLLLEE83 pKa = 4.25NLQLICPVCARR94 pKa = 11.84EE95 pKa = 3.89RR96 pKa = 11.84TLL98 pKa = 4.45

Molecular weight: 11.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F6TNI9|A0A0F6TNI9_9PAPI Protein E7 OS=Trichechus manatus papillomavirus 4 OX=1435497 GN=E7 PE=3 SV=1
MM1 pKa = 7.33IVVDD5 pKa = 3.85NWCLHH10 pKa = 3.99VKK12 pKa = 10.13YY13 pKa = 9.69RR14 pKa = 11.84DD15 pKa = 3.32RR16 pKa = 11.84VRR18 pKa = 11.84SPKK21 pKa = 9.17TSYY24 pKa = 9.8IRR26 pKa = 11.84RR27 pKa = 11.84SGRR30 pKa = 11.84SPLVGMDD37 pKa = 3.61QPTTLHH43 pKa = 7.21DD44 pKa = 3.95LQDD47 pKa = 4.2YY48 pKa = 10.84YY49 pKa = 11.72GLNYY53 pKa = 9.55WSIEE57 pKa = 4.07IPCLICKK64 pKa = 10.22QITTCRR70 pKa = 11.84DD71 pKa = 3.38RR72 pKa = 11.84IHH74 pKa = 7.01FEE76 pKa = 3.57RR77 pKa = 11.84GRR79 pKa = 11.84FKK81 pKa = 11.22LKK83 pKa = 9.39WKK85 pKa = 10.37CGLPYY90 pKa = 10.23AICLSCLRR98 pKa = 11.84FYY100 pKa = 10.66ATYY103 pKa = 10.38EE104 pKa = 3.49RR105 pKa = 11.84LYY107 pKa = 10.18QYY109 pKa = 10.7RR110 pKa = 11.84YY111 pKa = 8.37SQPVNDD117 pKa = 4.02VLQDD121 pKa = 3.24TGLNLFDD128 pKa = 4.67LSVRR132 pKa = 11.84CGLCLALLTFEE143 pKa = 4.97EE144 pKa = 4.78KK145 pKa = 10.91LFLSRR150 pKa = 11.84TGSWLQLCKK159 pKa = 10.82DD160 pKa = 3.39KK161 pKa = 10.99WRR163 pKa = 11.84GRR165 pKa = 11.84CSEE168 pKa = 4.06CRR170 pKa = 11.84YY171 pKa = 9.73HH172 pKa = 7.37

Molecular weight: 20.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2438

98

628

406.3

45.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.44 ± 0.824

2.051 ± 0.782

6.809 ± 0.432

4.963 ± 0.473

3.445 ± 0.523

7.301 ± 1.056

2.297 ± 0.301

4.307 ± 0.792

3.568 ± 0.79

9.393 ± 1.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.518 ± 0.257

3.486 ± 0.479

7.178 ± 1.07

4.225 ± 0.435

7.219 ± 0.545

7.752 ± 0.515

7.301 ± 0.908

5.742 ± 0.474

1.559 ± 0.386

3.445 ± 0.691
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski