Gemycircularvirus C1c

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykibivirus; Gemykibivirus humas3; Human associated gemykibivirus 3

Average proteome isoelectric point is 9.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0R7I4J2|A0A0R7I4J2_9VIRU Capsid protein OS=Gemycircularvirus C1c OX=1673681 GN=Cap PE=4 SV=1
MM1 pKa = 7.18FFFVEE6 pKa = 5.19GYY8 pKa = 8.98VAFYY12 pKa = 11.23VMAYY16 pKa = 7.66AHH18 pKa = 6.23RR19 pKa = 11.84RR20 pKa = 11.84FRR22 pKa = 11.84RR23 pKa = 11.84RR24 pKa = 11.84RR25 pKa = 11.84FARR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84PTFARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84VPRR40 pKa = 11.84RR41 pKa = 11.84SYY43 pKa = 9.71GRR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84SSGRR52 pKa = 11.84SVRR55 pKa = 11.84SIRR58 pKa = 11.84NIAARR63 pKa = 11.84KK64 pKa = 9.55CRR66 pKa = 11.84DD67 pKa = 3.06NMLGVPISTDD77 pKa = 3.61FQQQNPGPLTMFGDD91 pKa = 4.18TSHH94 pKa = 6.97GYY96 pKa = 10.21LFSPTARR103 pKa = 11.84RR104 pKa = 11.84VGSLDD109 pKa = 2.88GSLPRR114 pKa = 11.84GIHH117 pKa = 5.99ANSAEE122 pKa = 4.02RR123 pKa = 11.84WKK125 pKa = 9.51TRR127 pKa = 11.84CFVKK131 pKa = 10.58GLQEE135 pKa = 4.15TVEE138 pKa = 4.09LQPNNGAGWLWRR150 pKa = 11.84RR151 pKa = 11.84VVFSCIGLLEE161 pKa = 4.23EE162 pKa = 5.0FPTNSVAAPDD172 pKa = 3.55STRR175 pKa = 11.84GYY177 pKa = 10.92GRR179 pKa = 11.84AIWNMRR185 pKa = 11.84DD186 pKa = 3.05GSAAATPLYY195 pKa = 11.1NEE197 pKa = 3.87MANYY201 pKa = 9.99LFEE204 pKa = 4.34GTRR207 pKa = 11.84LRR209 pKa = 11.84DD210 pKa = 3.54WINPFTAKK218 pKa = 10.26LDD220 pKa = 3.75RR221 pKa = 11.84SIVTVHH227 pKa = 6.71SDD229 pKa = 3.16TTRR232 pKa = 11.84TIQSNNPNGTYY243 pKa = 10.26KK244 pKa = 10.18IFKK247 pKa = 9.71RR248 pKa = 11.84YY249 pKa = 9.47YY250 pKa = 7.6PVNRR254 pKa = 11.84GIVYY258 pKa = 10.49ADD260 pKa = 4.25DD261 pKa = 4.07EE262 pKa = 4.91SGSGSKK268 pKa = 10.59NDD270 pKa = 3.06AHH272 pKa = 6.36YY273 pKa = 10.8AAGTTKK279 pKa = 10.64GNSGDD284 pKa = 4.59LFVLDD289 pKa = 5.15LFNAINDD296 pKa = 3.73SSEE299 pKa = 3.49NTMNFGVHH307 pKa = 6.16ARR309 pKa = 11.84YY310 pKa = 8.98YY311 pKa = 7.43WHH313 pKa = 7.21EE314 pKa = 4.33GSGEE318 pKa = 3.88

Molecular weight: 36.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0R7I4J2|A0A0R7I4J2_9VIRU Capsid protein OS=Gemycircularvirus C1c OX=1673681 GN=Cap PE=4 SV=1
MM1 pKa = 7.18FFFVEE6 pKa = 5.19GYY8 pKa = 8.98VAFYY12 pKa = 11.23VMAYY16 pKa = 7.66AHH18 pKa = 6.23RR19 pKa = 11.84RR20 pKa = 11.84FRR22 pKa = 11.84RR23 pKa = 11.84RR24 pKa = 11.84RR25 pKa = 11.84FARR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84PTFARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84VPRR40 pKa = 11.84RR41 pKa = 11.84SYY43 pKa = 9.71GRR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84SSGRR52 pKa = 11.84SVRR55 pKa = 11.84SIRR58 pKa = 11.84NIAARR63 pKa = 11.84KK64 pKa = 9.55CRR66 pKa = 11.84DD67 pKa = 3.06NMLGVPISTDD77 pKa = 3.61FQQQNPGPLTMFGDD91 pKa = 4.18TSHH94 pKa = 6.97GYY96 pKa = 10.21LFSPTARR103 pKa = 11.84RR104 pKa = 11.84VGSLDD109 pKa = 2.88GSLPRR114 pKa = 11.84GIHH117 pKa = 5.99ANSAEE122 pKa = 4.02RR123 pKa = 11.84WKK125 pKa = 9.51TRR127 pKa = 11.84CFVKK131 pKa = 10.58GLQEE135 pKa = 4.15TVEE138 pKa = 4.09LQPNNGAGWLWRR150 pKa = 11.84RR151 pKa = 11.84VVFSCIGLLEE161 pKa = 4.23EE162 pKa = 5.0FPTNSVAAPDD172 pKa = 3.55STRR175 pKa = 11.84GYY177 pKa = 10.92GRR179 pKa = 11.84AIWNMRR185 pKa = 11.84DD186 pKa = 3.05GSAAATPLYY195 pKa = 11.1NEE197 pKa = 3.87MANYY201 pKa = 9.99LFEE204 pKa = 4.34GTRR207 pKa = 11.84LRR209 pKa = 11.84DD210 pKa = 3.54WINPFTAKK218 pKa = 10.26LDD220 pKa = 3.75RR221 pKa = 11.84SIVTVHH227 pKa = 6.71SDD229 pKa = 3.16TTRR232 pKa = 11.84TIQSNNPNGTYY243 pKa = 10.26KK244 pKa = 10.18IFKK247 pKa = 9.71RR248 pKa = 11.84YY249 pKa = 9.47YY250 pKa = 7.6PVNRR254 pKa = 11.84GIVYY258 pKa = 10.49ADD260 pKa = 4.25DD261 pKa = 4.07EE262 pKa = 4.91SGSGSKK268 pKa = 10.59NDD270 pKa = 3.06AHH272 pKa = 6.36YY273 pKa = 10.8AAGTTKK279 pKa = 10.64GNSGDD284 pKa = 4.59LFVLDD289 pKa = 5.15LFNAINDD296 pKa = 3.73SSEE299 pKa = 3.49NTMNFGVHH307 pKa = 6.16ARR309 pKa = 11.84YY310 pKa = 8.98YY311 pKa = 7.43WHH313 pKa = 7.21EE314 pKa = 4.33GSGEE318 pKa = 3.88

Molecular weight: 36.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

318

318

318

318.0

36.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.862 ± 0.0

0.943 ± 0.0

4.717 ± 0.0

3.774 ± 0.0

5.975 ± 0.0

8.805 ± 0.0

2.201 ± 0.0

3.774 ± 0.0

2.516 ± 0.0

5.346 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.201 ± 0.0

6.604 ± 0.0

4.403 ± 0.0

1.887 ± 0.0

12.579 ± 0.0

7.862 ± 0.0

6.289 ± 0.0

5.66 ± 0.0

1.887 ± 0.0

4.717 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski