Amino acid dipepetide frequency for Euphorbia yellow mosaic virus - Goias [Brazil:GO:Luziania 8675:2009]

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.949AlaAla: 3.949 ± 1.937
0.987AlaCys: 0.987 ± 0.833
2.962AlaAsp: 2.962 ± 1.487
1.974AlaGlu: 1.974 ± 0.965
0.987AlaPhe: 0.987 ± 0.908
3.949AlaGly: 3.949 ± 1.552
0.0AlaHis: 0.0 ± 0.0
1.974AlaIle: 1.974 ± 1.321
4.936AlaLys: 4.936 ± 1.373
3.949AlaLeu: 3.949 ± 1.242
0.0AlaMet: 0.0 ± 0.0
2.962AlaAsn: 2.962 ± 1.288
2.962AlaPro: 2.962 ± 1.203
2.962AlaGln: 2.962 ± 1.487
3.949AlaArg: 3.949 ± 2.736
6.91AlaSer: 6.91 ± 1.976
3.949AlaThr: 3.949 ± 1.604
2.962AlaVal: 2.962 ± 1.405
0.987AlaTrp: 0.987 ± 0.684
0.0AlaTyr: 0.0 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.987CysAla: 0.987 ± 1.391
0.0CysCys: 0.0 ± 0.0
0.987CysAsp: 0.987 ± 0.684
1.974CysGlu: 1.974 ± 0.776
0.987CysPhe: 0.987 ± 0.974
0.987CysGly: 0.987 ± 1.391
0.987CysHis: 0.987 ± 0.974
0.0CysIle: 0.0 ± 0.0
1.974CysLys: 1.974 ± 0.776
1.974CysLeu: 1.974 ± 0.914
0.0CysMet: 0.0 ± 0.0
0.987CysAsn: 0.987 ± 0.684
0.0CysPro: 0.0 ± 0.0
0.987CysGln: 0.987 ± 0.684
0.0CysArg: 0.0 ± 0.0
1.974CysSer: 1.974 ± 1.855
0.987CysThr: 0.987 ± 0.833
2.962CysVal: 2.962 ± 1.716
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.962AspAla: 2.962 ± 1.203
0.987AspCys: 0.987 ± 1.391
4.936AspAsp: 4.936 ± 2.677
1.974AspGlu: 1.974 ± 0.776
2.962AspPhe: 2.962 ± 1.203
1.974AspGly: 1.974 ± 0.914
0.0AspHis: 0.0 ± 0.0
4.936AspIle: 4.936 ± 3.808
0.987AspLys: 0.987 ± 0.833
5.923AspLeu: 5.923 ± 1.932
0.987AspMet: 0.987 ± 0.672
1.974AspAsn: 1.974 ± 1.321
2.962AspPro: 2.962 ± 1.332
0.987AspGln: 0.987 ± 0.908
3.949AspArg: 3.949 ± 1.604
2.962AspSer: 2.962 ± 0.925
0.987AspThr: 0.987 ± 0.684
6.91AspVal: 6.91 ± 2.268
0.987AspTrp: 0.987 ± 0.684
2.962AspTyr: 2.962 ± 1.487
0.0AspXaa: 0.0 ± 0.0
Glu
1.974GluAla: 1.974 ± 0.776
0.0GluCys: 0.0 ± 0.0
0.987GluAsp: 0.987 ± 0.908
1.974GluGlu: 1.974 ± 1.368
2.962GluPhe: 2.962 ± 1.332
4.936GluGly: 4.936 ± 1.373
0.0GluHis: 0.0 ± 0.0
0.987GluIle: 0.987 ± 0.908
0.0GluLys: 0.0 ± 0.0
2.962GluLeu: 2.962 ± 1.487
0.0GluMet: 0.0 ± 0.0
4.936GluAsn: 4.936 ± 2.162
0.987GluPro: 0.987 ± 0.833
0.987GluGln: 0.987 ± 0.833
1.974GluArg: 1.974 ± 0.914
5.923GluSer: 5.923 ± 1.795
0.987GluThr: 0.987 ± 0.833
1.974GluVal: 1.974 ± 0.965
0.987GluTrp: 0.987 ± 0.684
0.987GluTyr: 0.987 ± 0.684
0.0GluXaa: 0.0 ± 0.0
Phe
0.987PheAla: 0.987 ± 0.908
1.974PheCys: 1.974 ± 1.229
0.987PheAsp: 0.987 ± 0.833
0.0PheGlu: 0.0 ± 0.0
0.987PhePhe: 0.987 ± 0.684
2.962PheGly: 2.962 ± 0.916
0.987PheHis: 0.987 ± 0.684
4.936PheIle: 4.936 ± 2.312
2.962PheLys: 2.962 ± 2.824
5.923PheLeu: 5.923 ± 2.306
0.0PheMet: 0.0 ± 0.0
5.923PheAsn: 5.923 ± 1.514
1.974PhePro: 1.974 ± 1.267
3.949PheGln: 3.949 ± 1.009
2.962PheArg: 2.962 ± 1.332
1.974PheSer: 1.974 ± 0.914
1.974PheThr: 1.974 ± 0.914
0.0PheVal: 0.0 ± 0.0
2.962PheTrp: 2.962 ± 1.716
3.949PheTyr: 3.949 ± 1.86
0.0PheXaa: 0.0 ± 0.0
Gly
2.962GlyAla: 2.962 ± 2.052
1.974GlyCys: 1.974 ± 1.321
2.962GlyAsp: 2.962 ± 2.052
2.962GlyGlu: 2.962 ± 1.405
2.962GlyPhe: 2.962 ± 1.59
6.91GlyGly: 6.91 ± 3.121
1.974GlyHis: 1.974 ± 1.368
1.974GlyIle: 1.974 ± 0.776
7.897GlyLys: 7.897 ± 3.104
3.949GlyLeu: 3.949 ± 1.707
0.987GlyMet: 0.987 ± 0.908
0.987GlyAsn: 0.987 ± 0.833
4.936GlyPro: 4.936 ± 1.877
1.974GlyGln: 1.974 ± 1.666
1.974GlyArg: 1.974 ± 1.267
2.962GlySer: 2.962 ± 1.59
2.962GlyThr: 2.962 ± 1.766
3.949GlyVal: 3.949 ± 2.344
0.0GlyTrp: 0.0 ± 0.0
0.0GlyTyr: 0.0 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.962HisAla: 2.962 ± 1.203
1.974HisCys: 1.974 ± 1.267
0.987HisAsp: 0.987 ± 0.833
0.987HisGlu: 0.987 ± 0.908
0.0HisPhe: 0.0 ± 0.0
0.987HisGly: 0.987 ± 0.974
0.987HisHis: 0.987 ± 1.391
1.974HisIle: 1.974 ± 1.57
0.987HisLys: 0.987 ± 0.833
2.962HisLeu: 2.962 ± 1.405
0.0HisMet: 0.0 ± 0.0
2.962HisAsn: 2.962 ± 2.052
2.962HisPro: 2.962 ± 1.487
1.974HisGln: 1.974 ± 0.776
2.962HisArg: 2.962 ± 2.582
0.0HisSer: 0.0 ± 0.0
1.974HisThr: 1.974 ± 1.666
2.962HisVal: 2.962 ± 1.506
0.987HisTrp: 0.987 ± 0.684
0.987HisTyr: 0.987 ± 0.684
0.0HisXaa: 0.0 ± 0.0
Ile
0.0IleAla: 0.0 ± 0.0
0.987IleCys: 0.987 ± 0.833
4.936IleAsp: 4.936 ± 3.602
0.0IleGlu: 0.0 ± 0.0
3.949IlePhe: 3.949 ± 1.937
1.974IleGly: 1.974 ± 0.965
0.987IleHis: 0.987 ± 1.391
3.949IleIle: 3.949 ± 1.198
6.91IleLys: 6.91 ± 0.792
0.987IleLeu: 0.987 ± 0.833
0.987IleMet: 0.987 ± 0.684
0.0IleAsn: 0.0 ± 0.0
2.962IlePro: 2.962 ± 1.487
1.974IleGln: 1.974 ± 0.965
7.897IleArg: 7.897 ± 2.118
1.974IleSer: 1.974 ± 0.914
4.936IleThr: 4.936 ± 1.534
4.936IleVal: 4.936 ± 1.517
1.974IleTrp: 1.974 ± 1.23
3.949IleTyr: 3.949 ± 2.459
0.0IleXaa: 0.0 ± 0.0
Lys
3.949LysAla: 3.949 ± 1.009
0.0LysCys: 0.0 ± 0.0
4.936LysAsp: 4.936 ± 3.42
2.962LysGlu: 2.962 ± 2.052
3.949LysPhe: 3.949 ± 0.985
1.974LysGly: 1.974 ± 0.776
1.974LysHis: 1.974 ± 1.267
4.936LysIle: 4.936 ± 2.697
0.0LysLys: 0.0 ± 0.0
1.974LysLeu: 1.974 ± 0.776
1.974LysMet: 1.974 ± 1.675
5.923LysAsn: 5.923 ± 2.405
3.949LysPro: 3.949 ± 1.796
0.0LysGln: 0.0 ± 0.0
4.936LysArg: 4.936 ± 2.576
3.949LysSer: 3.949 ± 0.95
1.974LysThr: 1.974 ± 1.368
5.923LysVal: 5.923 ± 3.876
0.0LysTrp: 0.0 ± 0.0
2.962LysTyr: 2.962 ± 1.203
0.0LysXaa: 0.0 ± 0.0
Leu
0.0LeuAla: 0.0 ± 0.0
0.987LeuCys: 0.987 ± 0.684
3.949LeuAsp: 3.949 ± 1.421
1.974LeuGlu: 1.974 ± 1.204
3.949LeuPhe: 3.949 ± 2.844
5.923LeuGly: 5.923 ± 1.961
3.949LeuHis: 3.949 ± 1.937
2.962LeuIle: 2.962 ± 2.052
3.949LeuLys: 3.949 ± 1.552
2.962LeuLeu: 2.962 ± 1.458
1.974LeuMet: 1.974 ± 1.23
5.923LeuAsn: 5.923 ± 3.344
4.936LeuPro: 4.936 ± 1.874
3.949LeuGln: 3.949 ± 1.598
6.91LeuArg: 6.91 ± 2.717
6.91LeuSer: 6.91 ± 2.086
3.949LeuThr: 3.949 ± 1.848
2.962LeuVal: 2.962 ± 1.029
0.0LeuTrp: 0.0 ± 0.0
2.962LeuTyr: 2.962 ± 1.029
0.0LeuXaa: 0.0 ± 0.0
Met
1.974MetAla: 1.974 ± 1.666
0.0MetCys: 0.0 ± 0.0
2.962MetAsp: 2.962 ± 1.894
0.0MetGlu: 0.0 ± 0.0
1.974MetPhe: 1.974 ± 1.666
1.974MetGly: 1.974 ± 0.914
0.987MetHis: 0.987 ± 0.833
0.0MetIle: 0.0 ± 0.0
0.987MetLys: 0.987 ± 0.974
1.974MetLeu: 1.974 ± 1.855
0.0MetMet: 0.0 ± 0.0
0.0MetAsn: 0.0 ± 0.0
1.974MetPro: 1.974 ± 0.776
0.987MetGln: 0.987 ± 0.974
0.987MetArg: 0.987 ± 0.974
0.0MetSer: 0.0 ± 0.0
1.974MetThr: 1.974 ± 1.204
0.0MetVal: 0.0 ± 0.0
0.987MetTrp: 0.987 ± 0.684
2.962MetTyr: 2.962 ± 1.894
0.0MetXaa: 0.0 ± 0.0
Asn
6.91AsnAla: 6.91 ± 3.765
1.974AsnCys: 1.974 ± 1.267
2.962AsnAsp: 2.962 ± 1.029
1.974AsnGlu: 1.974 ± 1.666
2.962AsnPhe: 2.962 ± 1.897
0.987AsnGly: 0.987 ± 0.833
4.936AsnHis: 4.936 ± 3.082
2.962AsnIle: 2.962 ± 1.288
1.974AsnLys: 1.974 ± 1.368
2.962AsnLeu: 2.962 ± 1.746
1.974AsnMet: 1.974 ± 1.569
0.987AsnAsn: 0.987 ± 0.833
4.936AsnPro: 4.936 ± 0.933
0.0AsnGln: 0.0 ± 0.0
3.949AsnArg: 3.949 ± 1.283
5.923AsnSer: 5.923 ± 0.766
0.0AsnThr: 0.0 ± 0.0
4.936AsnVal: 4.936 ± 2.437
0.0AsnTrp: 0.0 ± 0.0
5.923AsnTyr: 5.923 ± 1.832
0.0AsnXaa: 0.0 ± 0.0
Pro
1.974ProAla: 1.974 ± 1.949
0.987ProCys: 0.987 ± 0.833
5.923ProAsp: 5.923 ± 3.857
0.987ProGlu: 0.987 ± 1.391
0.987ProPhe: 0.987 ± 0.684
0.987ProGly: 0.987 ± 0.684
3.949ProHis: 3.949 ± 1.937
3.949ProIle: 3.949 ± 1.707
5.923ProLys: 5.923 ± 2.037
4.936ProLeu: 4.936 ± 1.789
2.962ProMet: 2.962 ± 1.86
3.949ProAsn: 3.949 ± 1.198
2.962ProPro: 2.962 ± 1.487
0.987ProGln: 0.987 ± 1.391
5.923ProArg: 5.923 ± 1.604
8.885ProSer: 8.885 ± 3.265
2.962ProThr: 2.962 ± 1.762
2.962ProVal: 2.962 ± 0.925
2.962ProTrp: 2.962 ± 1.203
0.987ProTyr: 0.987 ± 0.833
0.0ProXaa: 0.0 ± 0.0
Gln
1.974GlnAla: 1.974 ± 1.23
0.0GlnCys: 0.0 ± 0.0
1.974GlnAsp: 1.974 ± 1.267
4.936GlnGlu: 4.936 ± 1.055
0.0GlnPhe: 0.0 ± 0.0
0.0GlnGly: 0.0 ± 0.0
0.987GlnHis: 0.987 ± 1.391
1.974GlnIle: 1.974 ± 0.965
0.0GlnLys: 0.0 ± 0.0
5.923GlnLeu: 5.923 ± 1.623
0.987GlnMet: 0.987 ± 0.974
0.0GlnAsn: 0.0 ± 0.0
0.987GlnPro: 0.987 ± 1.391
0.987GlnGln: 0.987 ± 0.974
0.987GlnArg: 0.987 ± 0.684
4.936GlnSer: 4.936 ± 1.373
0.0GlnThr: 0.0 ± 0.0
2.962GlnVal: 2.962 ± 1.894
0.0GlnTrp: 0.0 ± 0.0
0.987GlnTyr: 0.987 ± 0.833
0.0GlnXaa: 0.0 ± 0.0
Arg
7.897ArgAla: 7.897 ± 3.094
1.974ArgCys: 1.974 ± 0.914
4.936ArgAsp: 4.936 ± 2.182
1.974ArgGlu: 1.974 ± 1.267
8.885ArgPhe: 8.885 ± 2.599
6.91ArgGly: 6.91 ± 2.002
1.974ArgHis: 1.974 ± 1.23
3.949ArgIle: 3.949 ± 1.86
2.962ArgLys: 2.962 ± 1.029
2.962ArgLeu: 2.962 ± 1.203
1.974ArgMet: 1.974 ± 1.229
2.962ArgAsn: 2.962 ± 0.916
5.923ArgPro: 5.923 ± 1.831
0.0ArgGln: 0.0 ± 0.0
7.897ArgArg: 7.897 ± 5.123
1.974ArgSer: 1.974 ± 0.965
2.962ArgThr: 2.962 ± 1.762
3.949ArgVal: 3.949 ± 1.049
0.0ArgTrp: 0.0 ± 0.0
0.0ArgTyr: 0.0 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
1.974SerAla: 1.974 ± 1.368
1.974SerCys: 1.974 ± 0.914
1.974SerAsp: 1.974 ± 0.776
0.987SerGlu: 0.987 ± 0.974
3.949SerPhe: 3.949 ± 2.534
5.923SerGly: 5.923 ± 2.306
0.987SerHis: 0.987 ± 0.833
6.91SerIle: 6.91 ± 1.886
3.949SerLys: 3.949 ± 1.283
4.936SerLeu: 4.936 ± 2.206
0.987SerMet: 0.987 ± 0.974
5.923SerAsn: 5.923 ± 2.405
7.897SerPro: 7.897 ± 5.304
0.987SerGln: 0.987 ± 0.908
6.91SerArg: 6.91 ± 1.671
9.872SerSer: 9.872 ± 5.958
10.859SerThr: 10.859 ± 4.991
2.962SerVal: 2.962 ± 1.894
1.974SerTrp: 1.974 ± 0.776
3.949SerTyr: 3.949 ± 1.242
0.0SerXaa: 0.0 ± 0.0
Thr
3.949ThrAla: 3.949 ± 1.796
0.987ThrCys: 0.987 ± 0.974
1.974ThrAsp: 1.974 ± 0.965
1.974ThrGlu: 1.974 ± 1.321
0.987ThrPhe: 0.987 ± 0.684
2.962ThrGly: 2.962 ± 1.029
2.962ThrHis: 2.962 ± 1.458
0.987ThrIle: 0.987 ± 0.833
1.974ThrLys: 1.974 ± 1.368
1.974ThrLeu: 1.974 ± 1.229
0.987ThrMet: 0.987 ± 0.896
2.962ThrAsn: 2.962 ± 1.458
6.91ThrPro: 6.91 ± 4.89
1.974ThrGln: 1.974 ± 1.855
1.974ThrArg: 1.974 ± 0.776
8.885ThrSer: 8.885 ± 4.481
4.936ThrThr: 4.936 ± 1.672
3.949ThrVal: 3.949 ± 0.985
0.0ThrTrp: 0.0 ± 0.0
2.962ThrTyr: 2.962 ± 1.405
0.0ThrXaa: 0.0 ± 0.0
Val
0.987ValAla: 0.987 ± 0.684
0.0ValCys: 0.0 ± 0.0
0.0ValAsp: 0.0 ± 0.0
3.949ValGlu: 3.949 ± 1.988
1.974ValPhe: 1.974 ± 1.23
2.962ValGly: 2.962 ± 1.894
0.987ValHis: 0.987 ± 1.391
3.949ValIle: 3.949 ± 0.985
5.923ValLys: 5.923 ± 2.328
4.936ValLeu: 4.936 ± 1.692
1.974ValMet: 1.974 ± 1.666
6.91ValAsn: 6.91 ± 1.976
4.936ValPro: 4.936 ± 0.933
2.962ValGln: 2.962 ± 0.925
1.974ValArg: 1.974 ± 1.23
6.91ValSer: 6.91 ± 1.495
3.949ValThr: 3.949 ± 1.223
2.962ValVal: 2.962 ± 1.029
0.987ValTrp: 0.987 ± 0.908
4.936ValTyr: 4.936 ± 2.182
0.0ValXaa: 0.0 ± 0.0
Trp
1.974TrpAla: 1.974 ± 1.368
0.0TrpCys: 0.0 ± 0.0
0.987TrpAsp: 0.987 ± 1.391
0.987TrpGlu: 0.987 ± 0.908
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
1.974TrpLys: 1.974 ± 0.776
1.974TrpLeu: 1.974 ± 0.776
0.987TrpMet: 0.987 ± 0.833
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.987TrpGln: 0.987 ± 0.684
0.987TrpArg: 0.987 ± 0.833
0.0TrpSer: 0.0 ± 0.0
2.962TrpThr: 2.962 ± 1.405
1.974TrpVal: 1.974 ± 0.776
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.962TyrAla: 2.962 ± 2.499
0.987TyrCys: 0.987 ± 0.684
0.987TyrAsp: 0.987 ± 0.833
1.974TyrGlu: 1.974 ± 1.666
2.962TyrPhe: 2.962 ± 1.029
1.974TyrGly: 1.974 ± 1.267
2.962TyrHis: 2.962 ± 1.405
2.962TyrIle: 2.962 ± 1.203
1.974TyrLys: 1.974 ± 1.368
4.936TyrLeu: 4.936 ± 1.865
1.974TyrMet: 1.974 ± 1.15
2.962TyrAsn: 2.962 ± 1.029
0.987TyrPro: 0.987 ± 0.684
0.987TyrGln: 0.987 ± 0.684
2.962TyrArg: 2.962 ± 2.499
2.962TyrSer: 2.962 ± 1.458
1.974TyrThr: 1.974 ± 0.965
1.974TyrVal: 1.974 ± 1.23
0.0TyrTrp: 0.0 ± 0.0
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1014 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski