Turkeypox virus

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Avipoxvirus

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 170 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M3ZHH4|A0A0M3ZHH4_9POXV TGF-beta-like protein OS=Turkeypox virus OX=336486 PE=3 SV=1
MM1 pKa = 7.89LDD3 pKa = 4.07NINVLLLVAFVSAILIVDD21 pKa = 4.08FDD23 pKa = 3.81IVLYY27 pKa = 10.76AIIFYY32 pKa = 11.12ALLLIFNIDD41 pKa = 3.41PVISVFMLLVSLKK54 pKa = 10.82LVISLNNLLSEE65 pKa = 4.25YY66 pKa = 10.69LIDD69 pKa = 3.96

Molecular weight: 7.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M3ZK19|A0A0M3ZK19_9POXV Uncharacterized protein OS=Turkeypox virus OX=336486 PE=3 SV=1
MM1 pKa = 7.71EE2 pKa = 5.09IAKK5 pKa = 7.99EE6 pKa = 3.97TLIVIGLTILVIILVISGFSLILRR30 pKa = 11.84LIPGVYY36 pKa = 10.05SSVARR41 pKa = 11.84SSFTGGKK48 pKa = 8.87ILRR51 pKa = 11.84FMEE54 pKa = 4.25IFSTLMFIPGIIILYY69 pKa = 9.13AAYY72 pKa = 9.38IRR74 pKa = 11.84KK75 pKa = 8.58FRR77 pKa = 11.84SGNN80 pKa = 3.29

Molecular weight: 8.87 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

170

0

170

55063

54

1810

323.9

37.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.356 ± 0.105

2.185 ± 0.104

6.454 ± 0.123

5.127 ± 0.106

4.444 ± 0.149

3.781 ± 0.115

1.95 ± 0.058

11.24 ± 0.156

7.824 ± 0.165

9.213 ± 0.179

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.606 ± 0.067

7.826 ± 0.149

3.075 ± 0.106

1.823 ± 0.082

4.03 ± 0.107

7.591 ± 0.131

5.488 ± 0.103

5.376 ± 0.114

0.647 ± 0.046

5.964 ± 0.125
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski