Mycoplasma phocidae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma

Average proteome isoelectric point is 7.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 608 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z5IQS1|A0A2Z5IQS1_9MOLU 30S ribosomal protein S7 OS=Mycoplasma phocidae OX=142651 GN=rpsG PE=3 SV=1
MM1 pKa = 7.17SRR3 pKa = 11.84KK4 pKa = 9.14EE5 pKa = 3.78INIFTEE11 pKa = 3.88DD12 pKa = 3.19RR13 pKa = 11.84RR14 pKa = 11.84IITDD18 pKa = 4.24DD19 pKa = 3.28GDD21 pKa = 3.85EE22 pKa = 4.39IYY24 pKa = 11.4VLFDD28 pKa = 3.43LEE30 pKa = 4.62EE31 pKa = 5.16NGDD34 pKa = 3.88YY35 pKa = 11.18YY36 pKa = 11.44LILTDD41 pKa = 4.38GEE43 pKa = 4.2ALFFVKK49 pKa = 10.0EE50 pKa = 4.15HH51 pKa = 6.25NGKK54 pKa = 8.3ITEE57 pKa = 4.23IDD59 pKa = 3.64DD60 pKa = 3.76EE61 pKa = 4.95GEE63 pKa = 3.57IDD65 pKa = 4.14ILVDD69 pKa = 4.72LLFKK73 pKa = 10.28FAKK76 pKa = 10.33DD77 pKa = 3.45NLVLDD82 pKa = 4.85RR83 pKa = 11.84DD84 pKa = 3.96QKK86 pKa = 11.7SDD88 pKa = 4.05LLAKK92 pKa = 10.76LIGDD96 pKa = 4.3DD97 pKa = 4.05SEE99 pKa = 5.11KK100 pKa = 11.1SII102 pKa = 5.05

Molecular weight: 11.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z5IQ15|A0A2Z5IQ15_9MOLU TlyA family rRNA (Cytidine-2'-O)-methyltransferase OS=Mycoplasma phocidae OX=142651 GN=DA803_02150 PE=4 SV=1
MM1 pKa = 7.35ARR3 pKa = 11.84KK4 pKa = 9.72SLMVKK9 pKa = 10.4AEE11 pKa = 4.27RR12 pKa = 11.84EE13 pKa = 3.9PKK15 pKa = 9.9FAVRR19 pKa = 11.84KK20 pKa = 5.95YY21 pKa = 8.69TRR23 pKa = 11.84CQLCGRR29 pKa = 11.84VHH31 pKa = 6.88AVLRR35 pKa = 11.84KK36 pKa = 9.58YY37 pKa = 10.23KK38 pKa = 9.85ICRR41 pKa = 11.84ICFRR45 pKa = 11.84KK46 pKa = 9.48LAHH49 pKa = 6.61EE50 pKa = 4.39GKK52 pKa = 10.18IPGVKK57 pKa = 9.38KK58 pKa = 10.89ASWW61 pKa = 3.03

Molecular weight: 7.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

608

0

608

226822

37

2777

373.1

42.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.222 ± 0.089

0.466 ± 0.024

5.779 ± 0.094

6.997 ± 0.097

5.434 ± 0.09

4.504 ± 0.091

1.348 ± 0.04

10.111 ± 0.103

10.729 ± 0.105

9.128 ± 0.096

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.775 ± 0.042

8.295 ± 0.131

2.712 ± 0.057

3.041 ± 0.047

3.049 ± 0.071

6.798 ± 0.092

4.643 ± 0.066

4.986 ± 0.068

0.862 ± 0.035

4.121 ± 0.063
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski