Santa barbara virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Arurhavirus; Santabarbara arurhavirus

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A097A5B9|A0A097A5B9_9RHAB GDP polyribonucleotidyltransferase OS=Santa barbara virus OX=1552661 PE=4 SV=1
MM1 pKa = 7.68APILPFHH8 pKa = 7.35VDD10 pKa = 3.58LTAHH14 pKa = 6.96DD15 pKa = 4.37ASSAQLIADD24 pKa = 3.95QIHH27 pKa = 5.91FLIGFINDD35 pKa = 3.21LNTPLRR41 pKa = 11.84LVGIVKK47 pKa = 9.73QGYY50 pKa = 7.52WIKK53 pKa = 10.55IYY55 pKa = 10.79ALPDD59 pKa = 3.38QLNKK63 pKa = 10.33FMMDD67 pKa = 3.86LVNPLIFGPNSGLII81 pKa = 3.65

Molecular weight: 9.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A097A5A4|A0A097A5A4_9RHAB G protein OS=Santa barbara virus OX=1552661 PE=4 SV=1
MM1 pKa = 7.35EE2 pKa = 6.07RR3 pKa = 11.84GVFDD7 pKa = 5.24PLVNWLSQASNNVKK21 pKa = 10.23FYY23 pKa = 10.71FWVIWLLMLTLGFLFVLSKK42 pKa = 10.92AIDD45 pKa = 4.64LISSIILYY53 pKa = 7.77ATQFYY58 pKa = 10.64KK59 pKa = 10.86AFQISLRR66 pKa = 11.84WITKK70 pKa = 8.75KK71 pKa = 10.77CKK73 pKa = 9.74NCKK76 pKa = 8.62TNNNQISNKK85 pKa = 9.45RR86 pKa = 11.84GLRR89 pKa = 11.84SAVALVV95 pKa = 3.21

Molecular weight: 11.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

3932

81

2115

561.7

64.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.967 ± 0.566

1.602 ± 0.261

5.443 ± 0.34

6.612 ± 0.486

4.858 ± 0.53

5.036 ± 0.147

2.162 ± 0.191

8.291 ± 0.35

7.731 ± 0.372

10.224 ± 0.815

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.035 ± 0.218

6.384 ± 0.293

4.4 ± 0.358

3.484 ± 0.215

4.374 ± 0.337

7.884 ± 0.264

5.493 ± 0.359

4.476 ± 0.324

1.958 ± 0.277

3.586 ± 0.258
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski