Itacaiunas virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Curiovirus; Itacaiunas curiovirus

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D3R1F4|A0A0D3R1F4_9RHAB Phosphoprotein OS=Itacaiunas virus OX=490111 PE=4 SV=1
MM1 pKa = 8.17DD2 pKa = 5.51PPSYY6 pKa = 9.12WVNGARR12 pKa = 11.84PVLLRR17 pKa = 11.84EE18 pKa = 4.25SYY20 pKa = 10.4PVGEE24 pKa = 3.99QFIFRR29 pKa = 11.84GFTSLLGSLNKK40 pKa = 10.42ANIVNMLEE48 pKa = 4.05HH49 pKa = 6.14LQKK52 pKa = 10.52FASSPIYY59 pKa = 10.56YY60 pKa = 10.01KK61 pKa = 10.27IEE63 pKa = 4.2DD64 pKa = 4.08SILEE68 pKa = 3.98EE69 pKa = 3.93GAFFVTILDD78 pKa = 3.81PQNPQHH84 pKa = 7.11SSVV87 pKa = 3.31

Molecular weight: 9.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D3R127|A0A0D3R127_9RHAB Matrix OS=Itacaiunas virus OX=490111 PE=4 SV=1
MM1 pKa = 7.32EE2 pKa = 5.06NKK4 pKa = 10.41AFGLDD9 pKa = 3.4DD10 pKa = 4.59LGAFFKK16 pKa = 11.26NFITGISNQFNWFFKK31 pKa = 10.14TVFSLVIIFLLIKK44 pKa = 10.26ILVKK48 pKa = 10.56FMSGLSNCIAAGFKK62 pKa = 9.59IRR64 pKa = 11.84RR65 pKa = 11.84QVRR68 pKa = 11.84HH69 pKa = 4.85WRR71 pKa = 11.84NGNEE75 pKa = 4.32GSRR78 pKa = 11.84EE79 pKa = 3.97NPP81 pKa = 3.32

Molecular weight: 9.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

3951

81

2121

564.4

64.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.721 ± 0.576

1.696 ± 0.305

5.821 ± 0.463

6.707 ± 0.387

4.733 ± 0.535

6.454 ± 0.395

1.974 ± 0.103

6.074 ± 0.637

6.935 ± 0.268

10.301 ± 0.404

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.177 ± 0.391

4.91 ± 0.402

4.885 ± 0.372

2.632 ± 0.197

5.872 ± 0.393

9.086 ± 0.536

4.758 ± 0.609

6.201 ± 0.305

2.075 ± 0.168

2.987 ± 0.197
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski