Thaumarchaeota archaeon SCGC AB-539-E09

Taxonomy: cellular organisms; Archaea; TACK group; Thaumarchaeota; unclassified Thaumarchaeota

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 646 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M7TBZ5|M7TBZ5_9ARCH Nitrate/nitrite transporter OS=Thaumarchaeota archaeon SCGC AB-539-E09 OX=1198115 GN=MCGE09_00155 PE=4 SV=1
MM1 pKa = 7.27VLLPTCGSLFPDD13 pKa = 3.71EE14 pKa = 4.69EE15 pKa = 4.42MSLKK19 pKa = 10.13RR20 pKa = 11.84QYY22 pKa = 10.63IYY24 pKa = 11.3VVAICLSVIVAGAIIAYY41 pKa = 10.14NPFQEE46 pKa = 5.28KK47 pKa = 10.45EE48 pKa = 3.85DD49 pKa = 4.19DD50 pKa = 3.89NVFKK54 pKa = 10.55FPAGIPPSLGMEE66 pKa = 4.24YY67 pKa = 9.35ATTLGEE73 pKa = 4.11GDD75 pKa = 3.74VNSIQVSGQGSVSAKK90 pKa = 8.94ATQATLTLGAWTEE103 pKa = 4.18DD104 pKa = 3.41PVAAEE109 pKa = 3.9AVEE112 pKa = 4.91DD113 pKa = 3.84NALLMTSIIDD123 pKa = 4.24AIMGLGIDD131 pKa = 3.65EE132 pKa = 5.3DD133 pKa = 4.22KK134 pKa = 11.03IKK136 pKa = 10.05TVTYY140 pKa = 10.27SVSTNYY146 pKa = 10.31DD147 pKa = 2.77WEE149 pKa = 4.2TRR151 pKa = 11.84TIKK154 pKa = 10.55GYY156 pKa = 10.54RR157 pKa = 11.84VTNMIQVVVEE167 pKa = 4.77DD168 pKa = 3.51IDD170 pKa = 3.88MVGEE174 pKa = 4.48VIDD177 pKa = 3.56QAAAEE182 pKa = 4.46GANSIQGISFGISDD196 pKa = 4.5EE197 pKa = 4.24EE198 pKa = 4.41AKK200 pKa = 10.04TLANDD205 pKa = 4.17AYY207 pKa = 11.3VLALQNAQGKK217 pKa = 9.94ADD219 pKa = 5.66LIASTLDD226 pKa = 3.5LEE228 pKa = 4.65ITGVLYY234 pKa = 10.87VSEE237 pKa = 4.5SSYY240 pKa = 11.19TPYY243 pKa = 10.73SPYY246 pKa = 10.25RR247 pKa = 11.84SYY249 pKa = 11.7AEE251 pKa = 3.92EE252 pKa = 4.78AMDD255 pKa = 4.67SGFAAPTPIIEE266 pKa = 4.49GTLSVSVSVQVTFSFQQ282 pKa = 2.9

Molecular weight: 30.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M7TAJ0|M7TAJ0_9ARCH Extracellular solute-binding protein family 5 (Fragment) OS=Thaumarchaeota archaeon SCGC AB-539-E09 OX=1198115 GN=MCGE09_00563 PE=4 SV=1
MM1 pKa = 7.71RR2 pKa = 11.84LCSRR6 pKa = 11.84EE7 pKa = 3.74IGVGFSAFRR16 pKa = 11.84MLTGYY21 pKa = 11.15LNMPGRR27 pKa = 11.84TLGYY31 pKa = 10.01RR32 pKa = 11.84GIKK35 pKa = 9.74KK36 pKa = 9.45EE37 pKa = 3.77RR38 pKa = 11.84LYY40 pKa = 9.77MHH42 pKa = 7.19KK43 pKa = 10.51FFFNCC48 pKa = 4.15

Molecular weight: 5.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

646

0

646

143127

17

1365

221.6

25.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.682 ± 0.11

1.029 ± 0.034

5.522 ± 0.087

7.265 ± 0.131

4.258 ± 0.091

6.956 ± 0.102

1.856 ± 0.048

8.091 ± 0.12

6.354 ± 0.114

9.712 ± 0.105

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.692 ± 0.058

4.416 ± 0.097

4.193 ± 0.078

2.502 ± 0.056

5.252 ± 0.105

6.621 ± 0.085

5.238 ± 0.084

7.01 ± 0.102

1.348 ± 0.044

4.0 ± 0.08
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski